Factsheet for PGSC0003DMT400078676

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000547
PGSC0003DMT400004642
PGSC0003DMT400012843
PGSC0003DMT400015012
PGSC0003DMT400031865
PGSC0003DMT400034592
PGSC0003DMT400038352
PGSC0003DMT400038827
PGSC0003DMT400040761
PGSC0003DMT400046599
PGSC0003DMT400046635
PGSC0003DMT400052841
PGSC0003DMT400068387
PGSC0003DMT400074781

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	PGSC0003DMT400012843	AT1G01050.1	21798944
AT5G65683.1	PGSC0003DMT400015012	AT1G01050.1	21798944
AT5G65683.1	PGSC0003DMT400031865	AT1G01050.1	21798944
AT5G65683.1	PGSC0003DMT400000547	AT1G01510.1	21798944
AT5G65683.1	PGSC0003DMT400038352	AT3G03000.1	21798944
AT5G65683.1	PGSC0003DMT400040761	AT3G24140.1	21798944
AT5G65683.1	PGSC0003DMT400046599	AT3G48550.1	21798944
AT5G65683.1	PGSC0003DMT400046635	AT3G54170.1	21798944
AT5G65683.1	PGSC0003DMT400074781	AT3G56270.1	21798944
AT5G65683.1	PGSC0003DMT400034592	AT4G17220.1	21798944
AT5G65683.1	PGSC0003DMT400038827	AT4G17220.1	21798944
AT5G65683.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT5G65683.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT5G65683.1	PGSC0003DMT400068387	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091710.2.1	Tomato	plastid	98.03	97.08
VIT_07s0205g00030.t01	Wine grape	nucleus	61.18	66.31
KRH74431	Soybean	mitochondrion	54.01	56.47
KRH39527	Soybean	extracellular, golgi	41.07	53.97
PGSC0003DMT400016355	Potato	nucleus	56.68	53.45
CDY25618	Canola	nucleus, peroxisome, plastid	46.84	50.3
Bra030218.1-P	Field mustard	nucleus	46.98	49.7
KRH45468	Soybean	cytosol, peroxisome	27.99	49.38
CDX89500	Canola	cytosol, peroxisome, plastid	45.99	48.59
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	46.55	48.46
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	46.55	48.32
CDY31616	Canola	nucleus	46.41	48.03
KRH75634	Soybean	nucleus	43.6	47.84
Bra017859.1-P	Field mustard	plastid	42.05	47.31
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	45.01	46.44
AT4G37890.1	Thale cress	nucleus	47.96	46.14
Bra024408.1-P	Field mustard	plastid	45.57	45.76
CDY08765	Canola	plastid	45.57	45.76
CDY52535	Canola	plastid	45.29	45.35
CDY45614	Canola	plastid	45.15	45.08
Bra031849.1-P	Field mustard	plastid	44.73	44.92
AT5G65683.1	Thale cress	peroxisome, plastid	45.01	44.63
GSMUA_Achr5P14740_001	Banana	mitochondrion	42.19	43.35
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	44.3	43.03
Zm00001d024940_P001	Maize	peroxisome	44.59	43.01
Zm00001d004553_P001	Maize	peroxisome	44.87	42.53
KRH45469	Soybean	nucleus	10.55	42.37
TraesCS2A01G045100.1	Wheat	peroxisome	45.15	42.24
GSMUA_Achr7P01890_001	Banana	mitochondrion	42.33	42.16
TraesCS2D01G043700.1	Wheat	peroxisome	44.87	41.81
CDY37838	Canola	plastid	29.11	41.4
TraesCS2B01G057300.1	Wheat	peroxisome	44.73	41.3
GSMUA_Achr4P22090_001	Banana	nucleus	41.49	41.26
OQU81040	Sorghum	peroxisome	40.37	40.14
PGSC0003DMT400059986	Potato	nucleus	28.27	27.65
PGSC0003DMT400091492	Potato	nucleus	6.33	26.63
PGSC0003DMT400020896	Potato	mitochondrion, plastid	27.43	26.6
PGSC0003DMT400054479	Potato	plastid	26.44	26.55
PGSC0003DMT400070011	Potato	nucleus	15.61	20.94
PGSC0003DMT400085780	Potato	nucleus	6.75	12.31

Protein Annotations

EntrezGene:102587194	MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	UniProt:M1D0J2	PFAM:PF00092	PFAM:PF17123	EnsemblPlantsGene:PGSC0003DMG400030617
PGSC:PGSC0003DMG400030617	EnsemblPlants:PGSC0003DMT400078676	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF59
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002952A6F	InterPro:VWF_A
RefSeq:XP_006357754.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030617]

Coordinates

chr2:+:42077160..42080022

Molecular Weight (calculated)

79313.9 Da

IEP (calculated)

10.192

GRAVY (calculated)

-0.408

Length

711 amino acids

Sequence
(BLAST)

001: MVLGWRRAFC TSIPRDRDTK EKQDNTNPTP SPRINSKFGF FSNPSTPRFQ SPPVSSSILR CRTTATVQAA SAPGSPKLQC KTKNSPRFFN RSTPSSPRSP
101: STFSLLKSSL RFPKTKCGTC LQTVKTGQGT AIFTAECSHS FHFPCIAALL RKQTALVCPV CHSEWKELPL LSIHDTQKPV KVEEKTIREV SPSPKAKRDV
201: KFTTETNFQG RPILKVYNDD EPLMSPTSVA RFNPIPESDE YDEENDNVVE EFQGFFVDAN VKPEKESLVN FTNFEARLLP EAAVVSVGRS YETYVIILKL
301: KAPPVLTRTA RRAPIDLVMV LDVSGKMKAQ DIQMMKRAMR LVISTLSTSD RLSIVAFSTT SKRLLPLRRM TTSGKRSARR IVDAIVALDG TGTSASDALK
401: KAAKVLEDRR ERNPVASIML LSDCPNDRLT TTISTNQRYQ STIVSTCTRF NNSEIPVHSI GLNQSNDDVF KKFIGGIINV VVQDLRVQVG FVSGSAPAEV
501: AAVYSYTNRP AALGSGSLRL GDFYAEEERE LLVELKVPTS AIGTHHVLSV RCSYKDPSTQ ELVYCKEQAL LVPRPHAVRS STPNIQRLRD LFISTRAMAE
601: SKRLIERNDL TGAHHMLSSA RALLVQSNSS SAGEFVHGLE TELSELHYRR QNQTQQPHRR RINVQQREDD KAEPLTPTSA WRAAERLAKV AIMRKSLNRV
701: SDLHGFEDAR F

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.