Factsheet for PGSC0003DMT400046635

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009665
PGSC0003DMT400011022
PGSC0003DMT400046635
PGSC0003DMT400069825
PGSC0003DMT400083778

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54170.1	PGSC0003DMT400009665	AT1G19830.1	21798944
AT3G54170.1	PGSC0003DMT400069825	AT1G54770.1	21798944
AT3G54170.1	PGSC0003DMT400046635	AT3G54170.1	21798944
AT3G54170.1	PGSC0003DMT400011022	AT4G10760.1	18505803
AT3G54170.1	PGSC0003DMT400083778	AT5G64350.1	9807817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112520.2.1	Tomato	nucleus	95.91	95.91
VIT_17s0000g08940.t01	Wine grape	nucleus	73.68	73.26
KRH03247	Soybean	nucleus	70.47	70.26
KRH57111	Soybean	nucleus	69.59	70.21
KRH54345	Soybean	nucleus	66.67	66.47
AT3G54170.1	Thale cress	nucleus	63.45	65.76
KRH63594	Soybean	nucleus	67.84	65.54
CDX73501	Canola	nucleus	60.53	64.09
CDX67592	Canola	nucleus	64.33	63.95
GSMUA_Achr6P08880_001	Banana	nucleus	65.79	63.74
CDX78214	Canola	nucleus	59.94	63.27
TraesCS7A01G234600.1	Wheat	nucleus	64.91	63.07
CDY07554	Canola	nucleus	63.45	62.9
TraesCS7D01G234600.1	Wheat	nucleus	64.62	62.78
Os06t0474200-01	Rice	nucleus	64.62	62.78
TraesCS7B01G132800.1	Wheat	nucleus	64.62	62.25
Bra007052.1-P	Field mustard	endoplasmic reticulum	59.36	58.33
EES04471	Sorghum	nucleus	58.19	53.93
Zm00001d015194_P001	Maize	nucleus	57.6	53.24
Bra003174.1-P	Field mustard	endoplasmic reticulum, nucleus	46.2	53.2
HORVU7Hr1G048110.2	Barley	plastid	64.91	48.9
CDX67590	Canola	nucleus	28.95	44.2
Bra003173.1-P	Field mustard	nucleus	28.07	43.05
CDY51583	Canola	nucleus	27.49	41.59

Protein Annotations

EntrezGene:102602351	MapMan:16.5.1.1.3	ncoils:Coil	GO:GO:0000381	GO:GO:0001510	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0010073
GO:GO:0043621	GO:GO:0080009	UniProt:M1BJD7	PFAM:PF17098	EnsemblPlantsGene:PGSC0003DMG400018108	PGSC:PGSC0003DMG400018108
EnsemblPlants:PGSC0003DMT400046635	PANTHER:PTHR15217	UniParc:UPI0002961240	InterPro:WTAP	InterPro:WTAP/Mum2	RefSeq:XP_006344445.1
SEG:seg	:	:	:	:	:

Description

FKBP12-interacting protein of 37 kDa [Source:PGSC_GENE;Acc:PGSC0003DMG400018108]

Coordinates

chr3:-:52305924..52313862

Molecular Weight (calculated)

38650.6 Da

IEP (calculated)

4.668

GRAVY (calculated)

-0.779

Length

342 amino acids

Sequence
(BLAST)

001: MASHNHMDDD LDFGGDFAAT RRSGTKRSFG DLDDDEDDIF GSKKGNLLKV EETAPGAATG MILSLRESLQ DCKDTLASSQ TELESAKSEI QKWRSAFEKE
101: LFIPPGMTPE PKFVVSYLQN LRSSEESLRE QLERAKKKEA AFIVTFAKRE QEIAELKSAV RDLRAQLKPP SMQARKLLLD PAIHEEFTRL KNLVEEKDKK
201: VKELHDNIAA VNFTPQSKMG KMLMAKCRTL QEENEEIGNQ ANEGKIHELT MKLALQRSQN AELKSQFEGL CKQIEGLTND VERSNEMVLI LQDKVEEKDE
301: VISKLNEELN EKNTVVEKTE LTPDKTANDE EMTTTAAQAE NE

Best Arabidopsis Sequence Match ( AT3G54170.1 )
(BLAST)

001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE

Arabidopsis Description

FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.