Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78214 | Canola | nucleus | 95.67 | 95.37 |
| AT3G54170.1 | Thale cress | nucleus | 79.88 | 78.18 |
| CDX67592 | Canola | nucleus | 82.97 | 77.91 |
| CDY07554 | Canola | nucleus | 82.97 | 77.68 |
| VIT_17s0000g08940.t01 | Wine grape | nucleus | 65.94 | 61.92 |
| PGSC0003DMT400046635 | Potato | nucleus | 64.09 | 60.53 |
| KRH57111 | Soybean | nucleus | 63.47 | 60.47 |
| KRH03247 | Soybean | nucleus | 64.09 | 60.35 |
| Solyc03g112520.2.1 | Tomato | nucleus | 63.16 | 59.65 |
| TraesCS7A01G234600.1 | Wheat | nucleus | 63.78 | 58.52 |
| TraesCS7D01G234600.1 | Wheat | nucleus | 63.78 | 58.52 |
| TraesCS7B01G132800.1 | Wheat | nucleus | 64.09 | 58.31 |
| Os06t0474200-01 | Rice | nucleus | 63.16 | 57.95 |
| GSMUA_Achr6P08880_001 | Banana | nucleus | 62.54 | 57.22 |
| KRH54345 | Soybean | nucleus | 60.06 | 56.56 |
| KRH63594 | Soybean | nucleus | 61.3 | 55.93 |
| Zm00001d015194_P001 | Maize | nucleus | 57.28 | 50.0 |
| EES04471 | Sorghum | nucleus | 56.97 | 49.86 |
| CDX67590 | Canola | nucleus | 31.58 | 45.54 |
| HORVU7Hr1G048110.2 | Barley | plastid | 62.85 | 44.71 |
| CDY51583 | Canola | nucleus | 30.34 | 43.36 |
Protein Annotations
| MapMan:16.5.1.1.3 | GO:A0A078C8V2 | EnsemblPlants:CDX73501 | ProteinID:CDX73501 | ProteinID:CDX73501.1 | ncoils:Coil |
| GO:GO:0000381 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0048024 | GO:GO:0080009 | EnsemblPlantsGene:GSBRNA2T00109017001 |
| PFAM:PF17098 | PANTHER:PTHR15217 | UniParc:UPI0004EEB0A6 | InterPro:WTAP | InterPro:WTAP/Mum2 | SEG:seg |
Description
BnaC08g25020D
Coordinates
chrLK031799:-:748472..751142
Molecular Weight (calculated)
36776.4 Da
IEP (calculated)
4.821
GRAVY (calculated)
-0.911
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFPSTNAAR ASGSKRSFDD LEDDEDDIFG SKKGRTKAEE DAPGVTTSMI LSLRESLKNC KDELASCQNE LESAKTEIIK WKSAFQNESF VPAGKSPEPR
101: FLIDYIQNLK SSERSLKEQL EIAKRKEASC IVQYAKREQE MAELKSAVRD LKSQLKPASM QARRLLLDPA IHEEFSRLKN LVEEKDKKIK ELQDSYTAVT
201: FTPLGVKGRM LMEKCKTLQE ENEEIGRQAA EGKIHELAMK LSVQKSQNAE LRKQFEGLFK HMEGLTNDAE RSNETVIILQ DKLEEKEKEL ERVKKGMEEE
301: VVADKKDDEA HDDEDPKEID GGE
101: FLIDYIQNLK SSERSLKEQL EIAKRKEASC IVQYAKREQE MAELKSAVRD LKSQLKPASM QARRLLLDPA IHEEFSRLKN LVEEKDKKIK ELQDSYTAVT
201: FTPLGVKGRM LMEKCKTLQE ENEEIGRQAA EGKIHELAMK LSVQKSQNAE LRKQFEGLFK HMEGLTNDAE RSNETVIILQ DKLEEKEKEL ERVKKGMEEE
301: VVADKKDDEA HDDEDPKEID GGE
001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
Arabidopsis Description
FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.