Factsheet for Solyc03g112520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g105710.2.1
Solyc03g112520.2.1
Solyc04g081270.1.1
Solyc05g053220.2.1
Solyc08g066730.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54170.1	Solyc04g081270.1.1	AT1G19830.1	21798944
AT3G54170.1	Solyc05g053220.2.1	AT1G54770.1	21798944
AT3G54170.1	Solyc03g112520.2.1	AT3G54170.1	21798944
AT3G54170.1	Solyc08g066730.2.1	AT4G10760.1	18505803
AT3G54170.1	Solyc01g105710.2.1	AT5G64350.1	9807817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046635	Potato	nucleus	95.91	95.91
VIT_17s0000g08940.t01	Wine grape	nucleus	72.22	71.8
KRH03247	Soybean	nucleus	69.59	69.39
KRH57111	Soybean	nucleus	68.71	69.32
KRH54345	Soybean	nucleus	65.5	65.31
KRH63594	Soybean	nucleus	66.37	64.12
AT3G54170.1	Thale cress	nucleus	61.7	63.94
GSMUA_Achr6P08880_001	Banana	nucleus	65.5	63.46
CDX73501	Canola	nucleus	59.65	63.16
CDX67592	Canola	nucleus	63.45	63.08
CDX78214	Canola	nucleus	59.65	62.96
TraesCS7A01G234600.1	Wheat	nucleus	64.62	62.78
TraesCS7D01G234600.1	Wheat	nucleus	64.33	62.5
Os06t0474200-01	Rice	nucleus	64.33	62.5
CDY07554	Canola	nucleus	62.57	62.03
TraesCS7B01G132800.1	Wheat	nucleus	64.33	61.97
Bra007052.1-P	Field mustard	endoplasmic reticulum	58.77	57.76
EES04471	Sorghum	nucleus	57.6	53.39
Zm00001d015194_P001	Maize	nucleus	57.31	52.97
Bra003174.1-P	Field mustard	endoplasmic reticulum, nucleus	45.61	52.53
HORVU7Hr1G048110.2	Barley	plastid	64.62	48.68
CDX67590	Canola	nucleus	28.66	43.75
Bra003173.1-P	Field mustard	nucleus	27.78	42.6
CDY51583	Canola	nucleus	27.19	41.15

Protein Annotations

MapMan:16.5.1.1.3	ncoils:Coil	GO:GO:0000381	GO:GO:0001510	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0010073	GO:GO:0043621
GO:GO:0080009	UniProt:K4BKA5	PFAM:PF17098	PANTHER:PTHR15217	EnsemblPlantsGene:Solyc03g112520.2	EnsemblPlants:Solyc03g112520.2.1
UniParc:UPI00027674CB	InterPro:WTAP	InterPro:WTAP/Mum2	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:62906586..62914809

Molecular Weight (calculated)

38643.5 Da

IEP (calculated)

4.572

GRAVY (calculated)

-0.791

Length

342 amino acids

Sequence
(BLAST)

001: MASHNHMDDD LDFGGDFAAT GRSGTKRSFG DLDDDEDDIF GSKKGNLLKV EETAPGAATG MILSLRESLQ DCKDNLASTQ TELESAKSEI LKWRSAFEKE
101: PFIPPGMTPE PKFVVSYLQN LRSSEEALRE QLERAKKKEA AFIVTFAKRE QEIAELKSAV RDLRAQLKPP SMQARKLLLD PAIHEEFTRL KNLVEEKDKK
201: VKELHDNIAA VNFTPQSKMG KMLMAKCRTL QEENEEIGNQ ANEGKIHELT MKLALQRSQN AELKSHFEGL CKQIEGLTND VERSNEMVLI LQDRVAEKDE
301: EISKLNEELN EKNTIVEKTE LTPDETTNDE EMTTTEAQAE NE

Best Arabidopsis Sequence Match ( AT3G54170.1 )
(BLAST)

001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE

Arabidopsis Description

FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.