Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54170.1 | KXG19242 | AT1G19830.1 | 21798944 |
| AT3G54170.1 | EES05586 | AT1G54770.1 | 21798944 |
| AT3G54170.1 | EES04471 | AT3G54170.1 | 21798944 |
| AT3G54170.1 | EES07469 | AT4G10760.1 | 18505803 |
| AT3G54170.1 | EES07562 | AT5G64350.1 | 9807817 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015194_P001 | Maize | nucleus | 78.05 | 77.84 |
| TraesCS7D01G234600.1 | Wheat | nucleus | 70.19 | 73.58 |
| TraesCS7A01G234600.1 | Wheat | nucleus | 70.19 | 73.58 |
| TraesCS7B01G132800.1 | Wheat | nucleus | 70.19 | 72.96 |
| Os06t0474200-01 | Rice | nucleus | 68.56 | 71.88 |
| GSMUA_Achr6P08880_001 | Banana | nucleus | 63.96 | 66.86 |
| VIT_17s0000g08940.t01 | Wine grape | nucleus | 59.62 | 63.95 |
| KRH57111 | Soybean | nucleus | 53.93 | 58.7 |
| PGSC0003DMT400046635 | Potato | nucleus | 53.93 | 58.19 |
| KRH03247 | Soybean | nucleus | 53.66 | 57.73 |
| Solyc03g112520.2.1 | Tomato | nucleus | 53.39 | 57.6 |
| CDX73501 | Canola | nucleus | 49.86 | 56.97 |
| KRH54345 | Soybean | nucleus | 52.85 | 56.85 |
| CDX78214 | Canola | nucleus | 49.86 | 56.79 |
| AT3G54170.1 | Thale cress | nucleus | 50.68 | 56.67 |
| HORVU7Hr1G048110.2 | Barley | plastid | 69.11 | 56.17 |
| KRH63594 | Soybean | nucleus | 53.66 | 55.93 |
| CDX67592 | Canola | nucleus | 50.95 | 54.65 |
| CDY07554 | Canola | nucleus | 49.86 | 53.33 |
| Bra007052.1-P | Field mustard | endoplasmic reticulum | 49.86 | 52.87 |
| Bra003174.1-P | Field mustard | endoplasmic reticulum, nucleus | 39.84 | 49.49 |
| CDX67590 | Canola | nucleus | 22.22 | 36.61 |
| Bra003173.1-P | Field mustard | nucleus | 21.68 | 35.87 |
| CDY51583 | Canola | nucleus | 21.14 | 34.51 |
Protein Annotations
| MapMan:16.5.1.1.3 | EntrezGene:8057527 | UniProt:C5XTX6 | ncoils:Coil | EnsemblPlants:EES04471 | ProteinID:EES04471 |
| ProteinID:EES04471.1 | GO:GO:0000381 | GO:GO:0001510 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0010073 | GO:GO:0043621 | GO:GO:0080009 |
| PFAM:PF17098 | EnsemblPlantsGene:SORBI_3004G033100 | unigene:Sbi.8334 | UniParc:UPI0001A853ED | InterPro:WTAP/Mum2 | RefSeq:XP_002451495.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:2662338..2670260
Molecular Weight (calculated)
41050.1 Da
IEP (calculated)
4.716
GRAVY (calculated)
-0.825
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPWSPMSM EEDEEIQELD AEEQQGGEQP QQGDGQRPES TAEARAQQTG KKRARSAANS STNPSNSRKP EAKVKVEESA PGAATGVILS LRESLQDCKQ
101: SLASCQVELE TAKSEIEKWH SAFQSIAAVP SGTSPDPVSV VSYLSNLKSS EESLREQLEK AKKREAAYIV TFAKREQEIA ELKSAVRDLK TQLRPPSMQT
201: RRLLLDPAIH EEFTRLKNLV EEKERKIKEL QDNVAAVNFT PSSKLGKMLM AKCRTLQEEN EEIGAMASEG KIHELGMKIA VLKSQNNELR NQFDVLYKHM
301: DGVTNDVERS NEMVSILQEQ LEAKDLELAR LKETLSQKEG TQDAPVEERD EAGDDQKAAS DPLQVKVES
101: SLASCQVELE TAKSEIEKWH SAFQSIAAVP SGTSPDPVSV VSYLSNLKSS EESLREQLEK AKKREAAYIV TFAKREQEIA ELKSAVRDLK TQLRPPSMQT
201: RRLLLDPAIH EEFTRLKNLV EEKERKIKEL QDNVAAVNFT PSSKLGKMLM AKCRTLQEEN EEIGAMASEG KIHELGMKIA VLKSQNNELR NQFDVLYKHM
301: DGVTNDVERS NEMVSILQEQ LEAKDLELAR LKETLSQKEG TQDAPVEERD EAGDDQKAAS DPLQVKVES
001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
Arabidopsis Description
FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.