Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67590 | Canola | nucleus | 90.27 | 91.07 |
| CDX73501 | Canola | nucleus | 43.36 | 30.34 |
| CDX67592 | Canola | nucleus | 45.13 | 29.65 |
| CDX78214 | Canola | nucleus | 42.48 | 29.63 |
| CDY07554 | Canola | nucleus | 45.13 | 29.57 |
| AT3G54170.1 | Thale cress | nucleus | 42.92 | 29.39 |
| PGSC0003DMT400046635 | Potato | nucleus | 41.59 | 27.49 |
| Solyc03g112520.2.1 | Tomato | nucleus | 41.15 | 27.19 |
| VIT_17s0000g08940.t01 | Wine grape | nucleus | 40.71 | 26.74 |
| KRH57111 | Soybean | nucleus | 38.05 | 25.37 |
| KRH03247 | Soybean | nucleus | 38.5 | 25.36 |
| GSMUA_Achr6P08880_001 | Banana | nucleus | 39.38 | 25.21 |
| Os06t0474200-01 | Rice | nucleus | 38.94 | 25.0 |
| TraesCS7B01G132800.1 | Wheat | nucleus | 38.94 | 24.79 |
| TraesCS7D01G234600.1 | Wheat | nucleus | 38.05 | 24.43 |
| TraesCS7A01G234600.1 | Wheat | nucleus | 38.05 | 24.43 |
| KRH63594 | Soybean | nucleus | 36.28 | 23.16 |
| KRH54345 | Soybean | nucleus | 34.96 | 23.03 |
| EES04471 | Sorghum | nucleus | 34.51 | 21.14 |
| Zm00001d015194_P001 | Maize | nucleus | 33.63 | 20.54 |
| HORVU7Hr1G048110.2 | Barley | plastid | 37.17 | 18.5 |
Protein Annotations
| EnsemblPlants:CDY51583 | EnsemblPlantsGene:GSBRNA2T00003781001 | ncoils:Coil | ProteinID:CDY51583 | ProteinID:CDY51583.1 | SEG:seg |
| UniParc:UPI0004EDACC6 | UniProt:A0A078IR70 | MapMan:35.1 | : | : | : |
Description
BnaC06g42510DBnaC06g42510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IR70]
Coordinates
chrLK033008:-:55397..57351
Molecular Weight (calculated)
25169.4 Da
IEP (calculated)
4.463
GRAVY (calculated)
-0.742
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGDHSASG RTKRSFEDDE SDTSVSKKRC TCTKVDEEAA MIVSLTESLQ SCKDELASCQ SELESAKAEV DKWNTAFKQE SFVPSRKSPE PQFVIDYIQT
101: LKSSEKSLKE ELEIAQMKLA IRDLKSQLKP ESMKLQTDED PEVDGEEQGS TPAGTSRMAY LEDELRAANT VIAEMREIQA VRVDALEKAQ ATHAKEFEYL
201: KNNLLTLQQS PRLVLTAAPE NADAQK
101: LKSSEKSLKE ELEIAQMKLA IRDLKSQLKP ESMKLQTDED PEVDGEEQGS TPAGTSRMAY LEDELRAANT VIAEMREIQA VRVDALEKAQ ATHAKEFEYL
201: KNNLLTLQQS PRLVLTAAPE NADAQK
001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE
Arabidopsis Description
FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.