CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03247
KRH06595
KRH10589
KRH16004
KRH16007
KRH21780
KRH27951
KRH48077
KRH51719
KRH54345
KRH57111
KRH61056
KRH63594
KRH77516

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54170.1	KRH51719	AT1G19830.1	21798944
AT3G54170.1	KRH61056	AT1G19830.1	21798944
AT3G54170.1	KRH16004	AT1G54770.1	21798944
AT3G54170.1	KRH16007	AT1G54770.1	21798944
AT3G54170.1	KRH27951	AT1G54770.1	21798944
AT3G54170.1	KRH77516	AT1G54770.1	21798944
AT3G54170.1	KRH03247	AT3G54170.1	21798944
AT3G54170.1	KRH54345	AT3G54170.1	21798944
AT3G54170.1	KRH57111	AT3G54170.1	21798944
AT3G54170.1	KRH63594	AT3G54170.1	21798944
AT3G54170.1	KRH06595	AT4G10760.1	18505803
AT3G54170.1	KRH48077	AT4G10760.1	18505803
AT3G54170.1	KRH10589	AT5G64350.1	9807817
AT3G54170.1	KRH21780	AT5G64350.1	9807817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57111	Soybean	nucleus	94.17	95.28
KRH54345	Soybean	nucleus	76.97	76.97
VIT_17s0000g08940.t01	Wine grape	nucleus	75.22	75.0
KRH63594	Soybean	nucleus	77.26	74.86
PGSC0003DMT400046635	Potato	nucleus	70.26	70.47
Solyc03g112520.2.1	Tomato	nucleus	69.39	69.59
AT3G54170.1	Thale cress	nucleus	63.27	65.76
CDX73501	Canola	nucleus	60.35	64.09
GSMUA_Achr6P08880_001	Banana	nucleus	65.6	63.74
CDX67592	Canola	nucleus	63.85	63.66
CDY07554	Canola	nucleus	63.27	62.9
TraesCS7A01G234600.1	Wheat	nucleus	64.43	62.78
Os06t0474200-01	Rice	nucleus	64.43	62.78
TraesCS7B01G132800.1	Wheat	nucleus	64.72	62.54
TraesCS7D01G234600.1	Wheat	nucleus	64.14	62.5
CDX78214	Canola	nucleus	58.89	62.35
Bra007052.1-P	Field mustard	endoplasmic reticulum	58.89	58.05
Zm00001d015194_P001	Maize	nucleus	58.89	54.59
Bra003174.1-P	Field mustard	endoplasmic reticulum, nucleus	46.94	54.21
EES04471	Sorghum	nucleus	57.73	53.66
HORVU7Hr1G048110.2	Barley	plastid	63.85	48.24
CDX67590	Canola	nucleus	26.24	40.18
Bra003173.1-P	Field mustard	nucleus	25.66	39.46
CDY51583	Canola	nucleus	25.36	38.5

Protein Annotations

EntrezGene:100776997	MapMan:16.5.1.1.3	UniProt:A0A0R0FL39	EMBL:ACUP02010340	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G086600
GO:GO:0000381	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0080009	EnsemblPlants:KRH03247	ProteinID:KRH03247
ProteinID:KRH03247.1	PFAM:PF17098	PANTHER:PTHR15217	UniParc:UPI0006EE1881	InterPro:WTAP	InterPro:WTAP/Mum2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:6689133..6695720

Molecular Weight (calculated)

38751.6 Da

IEP (calculated)

4.770

GRAVY (calculated)

-0.862

Length

343 amino acids

Sequence
(BLAST)

001: MASPPHFDED FDFGGGFSGT HSDTIGNKRS SPDYDEDEYE NDPFGHKKAK SKAEEAASGV TTGMILSLRE SLQNCKDMLV TCQNELEAAK SEIQKWHSSF
101: QNEPFIPAET TPAPKLVINY LQALKSSEES LREQLEKAKK KEAAFIVTFA KREQEIAELK SAVRDLKAQL KPASMQARRL LLDPAVHEEF TRLKNLVEEK
201: DKKVKELQDN IAAVNFTPQS KMGKMLMAKC RTLQEENEEI GNQASEGKMH ELAMKLSVQK YQNAELRSQF EGLQKHMDGL TNDVDRSNEM VLMLQDKLEE
301: KDQEIQRLKD ELQPKSLVVE DGKTDPASNR NDDDETIPTE AAN

Best Arabidopsis Sequence Match ( AT3G54170.1 )
(BLAST)

001: MEFSSQDDDF GGDDSAANAT RASGNRRSFG DLEDDEDDIF GSTTVAPGVR TGMILSLRGS LKNCKDDLAS CQNELESAKT EIQKWKSAFQ NESFVPAGKS
101: PEPRFLIDYI QNLKSSEKSL KEQLEIAKRK EASCIVQYAK REQEMAELKS AVRDLKSQLK PASMQARRLL LDPAIHEEFS RLKNLVEEKD KKIKELQDNI
201: AAVTFTPQSK NGKMLMAKCR TLQEENEEIG HQAAEGKIHE LAIKLAMQKS QNAELRSQFE GLYKHMEELT NDVERSNETV IILQEKLEEK EKEIERVKKG
301: LEIVSELVGD KKDEVDEIDE DAKEEIAGGE

Arabidopsis Description

FIP37FIP37 [Source:UniProtKB/TrEMBL;Acc:A0A178V9T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.