Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH16004 | Soybean | nucleus | 98.25 | 57.73 |
| KRH27951 | Soybean | nucleus | 93.86 | 54.04 |
| KRH77516 | Soybean | endoplasmic reticulum | 93.86 | 53.77 |
| Solyc05g053220.2.1 | Tomato | nucleus | 66.67 | 39.38 |
| PGSC0003DMT400069825 | Potato | nucleus | 65.79 | 38.86 |
| GSMUA_Achr5P02030_001 | Banana | cytosol | 60.53 | 35.75 |
| AT1G54770.1 | Thale cress | nucleus | 57.02 | 34.39 |
| Zm00001d017927_P001 | Maize | nucleus | 57.89 | 33.5 |
| EES05586 | Sorghum | plastid | 57.89 | 33.5 |
| Os02t0730500-01 | Rice | nucleus, plastid | 57.02 | 33.33 |
| TraesCS6B01G322000.1 | Wheat | plastid | 56.14 | 32.32 |
| TraesCS6D01G272800.1 | Wheat | nucleus | 56.14 | 32.16 |
| TraesCS6A01G291500.1 | Wheat | plastid | 56.14 | 32.16 |
| AT5G30495.2 | Thale cress | nucleus | 55.26 | 32.14 |
| CDY59823 | Canola | nucleus | 50.88 | 30.21 |
| CDY00016 | Canola | nucleus | 50.88 | 30.21 |
| Bra036122.1-P | Field mustard | nucleus | 50.88 | 30.21 |
| VIT_05s0020g00780.t01 | Wine grape | nucleus | 77.19 | 29.33 |
| Zm00001d030306_P009 | Maize | cytosol | 32.46 | 24.67 |
| HORVU6Hr1G072940.1 | Barley | mitochondrion, plastid | 56.14 | 24.24 |
| Zm00001d051760_P001 | Maize | plastid | 57.89 | 23.0 |
| Zm00001d013738_P005 | Maize | mitochondrion | 31.58 | 21.3 |
| Zm00001d014233_P001 | Maize | nucleus, plastid | 31.58 | 13.09 |
Protein Annotations
| EMBL:ACUP02008752 | EnsemblPlants:KRH16007 | EnsemblPlantsGene:GLYMA_14G125900 | InterPro:Fcf2 | PANTHER:PTHR21686 | PFAM:PF08698 |
| ProteinID:KRH16007 | ProteinID:KRH16007.1 | SEG:seg | UniParc:UPI00029662B9 | UniProt:K7M6D6 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr14:-:19926735..19928087
Molecular Weight (calculated)
13230.1 Da
IEP (calculated)
11.118
GRAVY (calculated)
-1.087
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAQTITPEL QKDLKLLKLR AALDPKRHYK KGDSKSKTLP KYFQVGTVVD SPLDFFSGRL TKKKRKARLA DEVLSDQNLA AYRKRKVREI EEQNRPAGNE
101: KWKIKGSNSR RHKL
101: KWKIKGSNSR RHKL
001: MAETKQPLIG LKWEPKLPGL SLDLKTGSTR SKTAESSKSE LVDGLCLPPN DPRKINKMIR KQLKDTTGSN WFDMPAPTMT PELKRDLQLL KLRTVMDPAL
101: HYKKSVSRSK LAEKYFQIGT VIEPAEEFYG RLTKKNRKAT LADELVSDPK TALYRKRKVR EIEEKSRAVT NKKWNKKGNQ SKNTKPRRN
101: HYKKSVSRSK LAEKYFQIGT VIEPAEEFYG RLTKKNRKAT LADELVSDPK TALYRKRKVR EIEEKSRAVT NKKWNKKGNQ SKNTKPRRN
Arabidopsis Description
Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:Q84K05]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.