Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH16007 | Soybean | nucleus | 29.33 | 77.19 |
| Solyc05g053220.2.1 | Tomato | nucleus | 47.0 | 73.06 |
| PGSC0003DMT400069825 | Potato | nucleus | 46.33 | 72.02 |
| KRH27951 | Soybean | nucleus | 45.67 | 69.19 |
| KRH77516 | Soybean | endoplasmic reticulum | 45.67 | 68.84 |
| KRH16004 | Soybean | nucleus | 44.0 | 68.04 |
| GSMUA_Achr5P02030_001 | Banana | cytosol | 40.67 | 63.21 |
| AT1G54770.1 | Thale cress | nucleus | 39.33 | 62.43 |
| EES05586 | Sorghum | plastid | 40.67 | 61.93 |
| Os02t0730500-01 | Rice | nucleus, plastid | 40.0 | 61.54 |
| AT5G30495.2 | Thale cress | nucleus | 39.67 | 60.71 |
| TraesCS6B01G322000.1 | Wheat | plastid | 39.67 | 60.1 |
| Zm00001d017927_P001 | Maize | nucleus | 39.33 | 59.9 |
| CDY59823 | Canola | nucleus | 38.33 | 59.9 |
| CDY00016 | Canola | nucleus | 38.33 | 59.9 |
| Bra036122.1-P | Field mustard | nucleus | 38.33 | 59.9 |
| TraesCS6A01G291500.1 | Wheat | plastid | 39.33 | 59.3 |
| TraesCS6D01G272800.1 | Wheat | nucleus | 39.33 | 59.3 |
| HORVU6Hr1G072940.1 | Barley | mitochondrion, plastid | 40.0 | 45.45 |
| Zm00001d051760_P001 | Maize | plastid | 38.67 | 40.42 |
| Zm00001d030306_P009 | Maize | cytosol | 14.33 | 28.67 |
| Zm00001d013738_P005 | Maize | mitochondrion | 15.33 | 27.22 |
| Zm00001d014233_P001 | Maize | nucleus, plastid | 15.67 | 17.09 |
Protein Annotations
| ArrayExpress:VIT_05s0020g00780 | EMBL:FN595749 | EnsemblPlants:VIT_05s0020g00780.t01 | EnsemblPlantsGene:VIT_05s0020g00780 | EntrezGene:100240830 | EntrezGene:LOC100240830 |
| InterPro:Fcf2 | PANTHER:PTHR21686 | PFAM:PF08698 | ProteinID:CCB50292 | ProteinID:CCB50292.1 | RefSeq:XP_002268095 |
| RefSeq:XP_002268095.1 | RefSeq:XP_003631957 | RefSeq:XP_003631957.1 | SEG:seg | unigene:Vvi.18892 | UniParc:UPI0002108779 |
| UniProt:F6HE40 | wikigene:100240830 | wikigene:LOC100240830 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5:-:2645656..2648704
Molecular Weight (calculated)
33290.4 Da
IEP (calculated)
10.404
GRAVY (calculated)
-0.753
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLEDAGEAI LAEASRFPGT CSLAFSVGSR ASSSPSFYGN RVDSETFEEK AVAAESGGRR EEGGFSPSDP EWGPRKMVLA DGRAVVLAGR ENSGDVAIES
101: IRMSESKAVI GLSWEPKLSL LSSAPKNGSD KSENVAENSG ASLWKPDSEL VDGLFVPPNN PRKVNKLLRK QVKDTTGTKW FDMPAPTITP ELKKDLQLLK
201: LRSAIDPKRH YKKSDSKSKT LPKYFQVGTV IESASDFFSG RLTKKERKAS LADELLSNSS FADYRKRKVR EIEEQNRPAG VDKWKIKGRQ SWKRKKQRRH
101: IRMSESKAVI GLSWEPKLSL LSSAPKNGSD KSENVAENSG ASLWKPDSEL VDGLFVPPNN PRKVNKLLRK QVKDTTGTKW FDMPAPTITP ELKKDLQLLK
201: LRSAIDPKRH YKKSDSKSKT LPKYFQVGTV IESASDFFSG RLTKKERKAS LADELLSNSS FADYRKRKVR EIEEQNRPAG VDKWKIKGRQ SWKRKKQRRH
001: MAETKPLIGL TWEPKLPGLS LDTKTCSTSS KRVESHESSS LWMSKSELVD GLCLPPNDPK KINKMIRKQI KDTTGSNWFD MPAPTMTPEL KRDLQLLKLR
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
Arabidopsis Description
Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:F4KCY1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.