Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g053220.2.1 | Tomato | nucleus | 98.45 | 98.45 |
| KRH27951 | Soybean | nucleus | 67.88 | 66.16 |
| KRH16007 | Soybean | nucleus | 38.86 | 65.79 |
| KRH77516 | Soybean | endoplasmic reticulum | 67.36 | 65.33 |
| KRH16004 | Soybean | nucleus | 64.25 | 63.92 |
| GSMUA_Achr5P02030_001 | Banana | cytosol | 63.73 | 63.73 |
| AT1G54770.1 | Thale cress | nucleus | 62.18 | 63.49 |
| AT5G30495.2 | Thale cress | nucleus | 64.25 | 63.27 |
| Os02t0730500-01 | Rice | nucleus, plastid | 62.18 | 61.54 |
| CDY59823 | Canola | nucleus | 61.14 | 61.46 |
| CDY00016 | Canola | nucleus | 61.14 | 61.46 |
| Bra036122.1-P | Field mustard | nucleus | 61.14 | 61.46 |
| TraesCS6D01G272800.1 | Wheat | nucleus | 62.69 | 60.8 |
| TraesCS6B01G322000.1 | Wheat | plastid | 62.18 | 60.61 |
| TraesCS6A01G291500.1 | Wheat | plastid | 62.18 | 60.3 |
| EES05586 | Sorghum | plastid | 61.14 | 59.9 |
| Zm00001d017927_P001 | Maize | nucleus | 59.59 | 58.38 |
| VIT_05s0020g00780.t01 | Wine grape | nucleus | 72.02 | 46.33 |
| HORVU6Hr1G072940.1 | Barley | mitochondrion, plastid | 61.66 | 45.08 |
| Zm00001d051760_P001 | Maize | plastid | 58.55 | 39.37 |
| Zm00001d030306_P009 | Maize | cytosol | 22.8 | 29.33 |
| Zm00001d013738_P005 | Maize | mitochondrion | 24.87 | 28.4 |
| Zm00001d014233_P001 | Maize | nucleus, plastid | 25.91 | 18.18 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069825 | EnsemblPlantsGene:PGSC0003DMG400027150 | EntrezGene:102602630 | InterPro:Fcf2 | PANTHER:PTHR21686 | PFAM:PF08698 |
| PGSC:PGSC0003DMG400027150 | RefSeq:XP_006355714.1 | RefSeq:XP_006355715.1 | RefSeq:XP_015167969.1 | SEG:seg | UniParc:UPI00029583FD |
| UniProt:M1CL78 | MapMan:35.2 | : | : | : | : |
Description
Acidic 82 kDa protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027150]
Coordinates
chr5:+:48501543..48505050
Molecular Weight (calculated)
22418.2 Da
IEP (calculated)
11.019
GRAVY (calculated)
-1.191
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MPENKPVIGL SWEPKLPQLS FGTKKSNNEV PRASAVYKPS SELMDGLFVP PNDPKKVNKL LRKQIKDTTG KNWFDMPAPT ITPELKRDLQ LLKLRGAMDP
101: KRHYKKSGSK SKTLPKYFQV GTVIEPASEY YSGRLTKKER KTTLTEELFS DRKLGEYRKR KVREIEERNR PGGVDKWKNR GPQSRKRAKQ RRH
101: KRHYKKSGSK SKTLPKYFQV GTVIEPASEY YSGRLTKKER KTTLTEELFS DRKLGEYRKR KVREIEERNR PGGVDKWKNR GPQSRKRAKQ RRH
001: MAETKPLIGL TWEPKLPGLS LDTKTCSTSS KRVESHESSS LWMSKSELVD GLCLPPNDPK KINKMIRKQI KDTTGSNWFD MPAPTMTPEL KRDLQLLKLR
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
Arabidopsis Description
Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:F4KCY1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.