Factsheet for Solyc05g053220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082100.2.1
Solyc02g092930.1.1
Solyc03g113740.2.1
Solyc06g007110.2.1
Solyc06g074190.2.1
Solyc10g005220.2.1
Solyc10g007730.2.1
Solyc11g068720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54770.1	Solyc10g007730.2.1	AT1G06510.1	21798944
AT1G54770.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT1G54770.1	Solyc10g005220.2.1	AT1G30860.1	21798944
AT1G54770.1	Solyc02g092930.1.1	AT2G23290.1	21798944
AT1G54770.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT1G54770.1	Solyc06g074190.2.1	AT5G22310.1	21798944
AT1G54770.1	Solyc11g068720.1.1	AT5G22310.1	21798944
AT1G54770.1	Solyc06g007110.2.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069825	Potato	nucleus	98.45	98.45
KRH27951	Soybean	nucleus	68.91	67.17
KRH16007	Soybean	nucleus	39.38	66.67
KRH77516	Soybean	endoplasmic reticulum	68.39	66.33
KRH16004	Soybean	nucleus	65.28	64.95
GSMUA_Achr5P02030_001	Banana	cytosol	64.25	64.25
AT1G54770.1	Thale cress	nucleus	62.69	64.02
AT5G30495.2	Thale cress	nucleus	64.77	63.78
Os02t0730500-01	Rice	nucleus, plastid	62.69	62.05
CDY59823	Canola	nucleus	61.14	61.46
CDY00016	Canola	nucleus	61.14	61.46
Bra036122.1-P	Field mustard	nucleus	61.14	61.46
TraesCS6D01G272800.1	Wheat	nucleus	63.21	61.31
TraesCS6B01G322000.1	Wheat	plastid	62.69	61.11
EES05586	Sorghum	plastid	62.18	60.91
TraesCS6A01G291500.1	Wheat	plastid	62.69	60.8
Zm00001d017927_P001	Maize	nucleus	60.1	58.88
VIT_05s0020g00780.t01	Wine grape	nucleus	73.06	47.0
HORVU6Hr1G072940.1	Barley	mitochondrion, plastid	62.18	45.45
Zm00001d051760_P001	Maize	plastid	59.59	40.07
Zm00001d030306_P009	Maize	cytosol	23.32	30.0
Zm00001d013738_P005	Maize	mitochondrion	25.39	28.99
Zm00001d014233_P001	Maize	nucleus, plastid	26.42	18.55

Protein Annotations

EnsemblPlants:Solyc05g053220.2.1	EnsemblPlantsGene:Solyc05g053220.2	InterPro:Fcf2	PANTHER:PTHR21686	PFAM:PF08698	SEG:seg
UniParc:UPI00027662F7	UniProt:K4C202	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5:+:63354871..63357336

Molecular Weight (calculated)

22258.0 Da

IEP (calculated)

10.966

GRAVY (calculated)

-1.150

Length

193 amino acids

Sequence
(BLAST)

001: MPENKPVIGL SWEPKLPQLS FGTKKSSNEV PGASAVYKPS SELMDGLFVP PNDPKKVNKL LRKQIKDTTG KNWFDMPAPT ITPELKRDLQ LLKLRGAMDP
101: KRHYKKSGSK SKTLPKYFQV GTVIEPASEY YSGRLTKKER KTTLTEELLS DRKLGEYRKR KVREIEERNR PGGVDKWKNR GPQSRKRAKQ RRH

Best Arabidopsis Sequence Match ( AT5G30495.1 )
(BLAST)

001: MAETKPLIGL TWEPKLPGLS LDTKTCSTSS KRVESHESSS LWMSKSELVD GLCLPPNDPK KINKMIRKQI KDTTGSNWFD MPAPTMTPEL KRDLQLLKLR
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN

Arabidopsis Description

Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:F4KCY1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.