Factsheet for Solyc11g068720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g106560.2.1
Solyc02g067920.2.1
Solyc02g078140.2.1
Solyc03g006400.2.1
Solyc03g115070.1.1
Solyc04g025600.1.1
Solyc06g074190.2.1
Solyc07g055200.2.1
Solyc09g082970.2.1
Solyc10g083190.1.1
Solyc11g005700.1.1
Solyc11g068720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22310.1	Solyc04g025600.1.1	AT1G06390.1	21798944
AT5G22310.1	Solyc07g055200.2.1	AT1G06390.1	21798944
AT5G22310.1	Solyc02g067920.2.1	AT3G01690.1	21798944
AT5G22310.1	Solyc10g083190.1.1	AT3G11590.1	21798944
AT5G22310.1	Solyc11g005700.1.1	AT3G18710.1	21798944
AT5G22310.1	Solyc09g082970.2.1	AT3G22960.1	21798944
AT5G22310.1	Solyc01g106560.2.1	AT4G33690.1	21798944
AT5G22310.1	Solyc06g074190.2.1	AT5G22310.1	21798944
AT5G22310.1	Solyc11g068720.1.1	AT5G22310.1	21798944
AT5G22310.1	Solyc02g078140.2.1	AT5G58950.1	21798944
AT5G22310.1	Solyc03g006400.2.1	AT5G58950.1	21798944
AT5G22310.1	Solyc03g115070.1.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067737	Potato	nucleus	86.75	96.32
Solyc06g074190.2.1	Tomato	nucleus	51.26	59.96
VIT_06s0080g00930.t01	Wine grape	plastid	53.94	52.45
KRH25284	Soybean	plastid	45.43	43.7
KRH30384	Soybean	plastid	45.43	43.5
Solyc10g083190.1.1	Tomato	plastid	42.11	40.39
Bra006620.1-P	Field mustard	nucleus	25.08	35.26
CDX88802	Canola	nucleus	25.24	34.19
GSMUA_Achr6P16290_001	Banana	nucleus	33.12	34.04
CDX70996	Canola	nucleus	25.39	33.89
AT5G22310.1	Thale cress	nucleus	25.71	33.89
CDY67997	Canola	mitochondrion, plastid	24.76	33.33
CDX92367	Canola	mitochondrion, plastid	24.76	32.71
Bra002404.1-P	Field mustard	nucleus	24.92	32.64
Os02t0506100-00	Rice	plastid	20.5	29.82
HORVU2Hr1G069400.8	Barley	nucleus	23.66	29.47
EES11990	Sorghum	nucleus	26.34	29.4
TraesCS2D01G281000.1	Wheat	nucleus, plastid	26.03	29.15
TraesCS2B01G299400.1	Wheat	nucleus, plastid	25.55	29.08
Os04t0382800-00	Rice	nucleus	26.03	28.9
Zm00001d025208_P002	Maize	nucleus	26.66	28.84
TraesCS2A01G282200.1	Wheat	nucleus	25.55	28.62
Zm00001d003996_P001	Maize	nucleus	25.55	28.47
TraesCS7D01G134000.1	Wheat	nucleus	25.55	27.98
TraesCS7B01G035800.1	Wheat	nucleus	24.92	27.34
TraesCS7A01G134600.1	Wheat	nucleus	24.92	27.29
GSMUA_Achr6P08260_001	Banana	nucleus	24.61	27.23
KXG30263	Sorghum	mitochondrion	25.24	25.72
Zm00001d000402_P001	Maize	mitochondrion	21.45	24.82
Solyc07g064580.2.1	Tomato	nucleus	23.19	21.84
Solyc12g005010.1.1	Tomato	nucleus	22.4	21.16
Solyc08g081830.2.1	Tomato	nucleus, plastid	22.4	20.94
Solyc02g080520.2.1	Tomato	nucleus	20.03	20.06
Solyc01g095390.2.1	Tomato	nucleus	15.46	17.19

Protein Annotations

EnsemblPlants:Solyc11g068720.1.1	EnsemblPlantsGene:Solyc11g068720.1	ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF16	SEG:seg
UniParc:UPI000276A610	UniProt:K4DA29	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr11:+:53352238..53355895

Molecular Weight (calculated)

72249.5 Da

IEP (calculated)

7.288

GRAVY (calculated)

-0.947

Length

634 amino acids

Sequence
(BLAST)

001: MIRQNWNGEE CNNKVRKRGG SSSSSSSLVQ SYRLKRAVLV GKRGGGSNST TPVPLWKMNS RSPSLQNDSG NSSKIFKNLQ QQTAKGTVSD LSVSARKLGA
101: TLWEINGVVL PIPKKEENFL KSSSKFGALA SQITPVSERM ERSNLDSDRR RTSIGSHRIL QTDFSLQNGC LIEVDQTQNR GSSVDRHRLK DVKNGLSASK
201: ELLKVLNRVW GVEEHQSVCL SLFSAMKAEL DRSCIQVTKL IHEQRYSNYH GEVDVLLKQF EEEKASWKLK EQDKIYAAIT SIAKELKVEK KLRKQTERLN
301: KKLGKELADT KTSLSKATKE LEGEKRAREI LEQVCDELAR GIGEDRAEVE ELKRQSVKVR EEVEKEREML QLADVLREER VQMKLSEAKY QFEEKNAVVD
401: KLRNELEAYL RSKNGQEHGG ESPNYERIKE LERHLRETLP STCYYQDKEK ENGEVLDDDD DDNDSADSDL HSIELNMDDN TKSYQWCSTL QDDPKRSSVS
501: EKSKGRRSIS EKFPRQSISI ERETSDGIEW EFSAGGGKEN MSTFDTCDKG RSNFHENGPI FDFSSHVWKK DCEDEIERYK MIKDLRDHIV SASQKTPSQQ
601: SFSSPTKNWN QQNLPSSDAE RVINEAFAVL QGAN

Best Arabidopsis Sequence Match ( AT3G11590.1 )
(BLAST)

001: MPRQNQSVEN LLLLGKIRKR GCSSPTSSTS SILREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPRAS GALHAAASPS SHCGSKTGKV SAPAPVSARK
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW

Arabidopsis Description

At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.