Factsheet for Solyc06g074190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g106560.2.1
Solyc02g067920.2.1
Solyc02g078140.2.1
Solyc03g006400.2.1
Solyc03g115070.1.1
Solyc04g025600.1.1
Solyc06g074190.2.1
Solyc07g055200.2.1
Solyc09g082970.2.1
Solyc10g083190.1.1
Solyc11g005700.1.1
Solyc11g068720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22310.1	Solyc04g025600.1.1	AT1G06390.1	21798944
AT5G22310.1	Solyc07g055200.2.1	AT1G06390.1	21798944
AT5G22310.1	Solyc02g067920.2.1	AT3G01690.1	21798944
AT5G22310.1	Solyc10g083190.1.1	AT3G11590.1	21798944
AT5G22310.1	Solyc11g005700.1.1	AT3G18710.1	21798944
AT5G22310.1	Solyc09g082970.2.1	AT3G22960.1	21798944
AT5G22310.1	Solyc01g106560.2.1	AT4G33690.1	21798944
AT5G22310.1	Solyc06g074190.2.1	AT5G22310.1	21798944
AT5G22310.1	Solyc11g068720.1.1	AT5G22310.1	21798944
AT5G22310.1	Solyc02g078140.2.1	AT5G58950.1	21798944
AT5G22310.1	Solyc03g006400.2.1	AT5G58950.1	21798944
AT5G22310.1	Solyc03g115070.1.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015076	Potato	nucleus	93.17	88.75
Solyc11g068720.1.1	Tomato	nucleus	59.96	51.26
VIT_06s0080g00930.t01	Wine grape	plastid	47.42	39.42
KRH25284	Soybean	plastid	39.67	32.63
KRH30384	Soybean	plastid	39.48	32.33
Solyc10g083190.1.1	Tomato	plastid	38.19	31.32
Os02t0506100-00	Rice	plastid	23.06	28.67
GSMUA_Achr6P16290_001	Banana	nucleus	31.0	27.23
HORVU2Hr1G069400.8	Barley	nucleus	25.28	26.92
Bra006620.1-P	Field mustard	nucleus	22.32	26.83
CDX70996	Canola	nucleus	22.88	26.11
CDX88802	Canola	nucleus	22.51	26.07
CDX92367	Canola	mitochondrion, plastid	22.88	25.83
Bra002404.1-P	Field mustard	nucleus	23.06	25.83
AT5G22310.1	Thale cress	nucleus	22.51	25.36
CDY67997	Canola	mitochondrion, plastid	21.96	25.27
TraesCS2A01G282200.1	Wheat	nucleus	26.01	24.91
TraesCS2D01G281000.1	Wheat	nucleus, plastid	25.65	24.56
TraesCS2B01G299400.1	Wheat	nucleus, plastid	24.91	24.24
Zm00001d000402_P001	Maize	mitochondrion	23.8	23.54
EES11990	Sorghum	nucleus	24.54	23.42
Zm00001d003996_P001	Maize	nucleus	24.35	23.2
TraesCS7D01G134000.1	Wheat	nucleus	24.72	23.14
TraesCS7A01G134600.1	Wheat	nucleus	24.72	23.14
Os04t0382800-00	Rice	nucleus	24.35	23.12
Zm00001d025208_P002	Maize	nucleus	24.91	23.04
TraesCS7B01G035800.1	Wheat	nucleus	24.54	23.01
KXG30263	Sorghum	mitochondrion	25.83	22.51
GSMUA_Achr6P08260_001	Banana	nucleus	21.77	20.59
Solyc07g064580.2.1	Tomato	nucleus	24.91	20.06
Solyc12g005010.1.1	Tomato	nucleus	23.99	19.37
Solyc02g080520.2.1	Tomato	nucleus	21.96	18.8
Solyc08g081830.2.1	Tomato	nucleus, plastid	21.77	17.4
Solyc01g095390.2.1	Tomato	nucleus	16.79	15.96

Protein Annotations

EnsemblPlants:Solyc06g074190.2.1	EnsemblPlantsGene:Solyc06g074190.2	ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF16	SEG:seg
UniParc:UPI00027663B9	UniProt:K4C9D7	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6:-:45873027..45875822

Molecular Weight (calculated)

62569.7 Da

IEP (calculated)

7.037

GRAVY (calculated)

-1.004

Length

542 amino acids

Sequence
(BLAST)

001: MSSSRSTSLH NDKYMQTEGS DDLSVSARKL ASTLWETKLK DLEEMGWKER VSKLGSAALQ FHHPVSERME RSKVGSHRRR KSTKADLSNQ NDYSIELDRK
101: NHEQTLSRHH LKDVCHGLDT CKELLKVLSH VWNLKDQKST CSSLFSAINT ELDRLCDEVS KLKHEHRHNH SEVDVLLKKF EEEKMAWKVK EQDKIHTAIT
201: SVAREFKTEK KLRKQTERLN KKLGRELADL KASLSKAVKE LEGEKRDREI LEQVCDELAR GLGEDRAEME ELKRRSAKIR EEVEMEQKVL QLADVMREER
301: VQMKLSEAKY QFKEKNTVVD ELRNELEAYL RSKKGQEQGC DSLNYETINE LEKQFRGTLP STHHYRDKEK ADVEILDKEE DGEEDDSTDS DLHSIELNMG
401: DNSKSHQWST ALQNDPNRLL VSDKNKGRRS IAEKENVNTI YRGISNLLNN GGTPEFSSQA WKKDHADETE RYKMIKNLCD RIISASRITA SQGFSGPTNN
501: CSQQKFSAND PNKVMVRVLP SCREKLEGTP EIIALSCREL LE

Best Arabidopsis Sequence Match ( AT3G11590.1 )
(BLAST)

001: MPRQNQSVEN LLLLGKIRKR GCSSPTSSTS SILREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPRAS GALHAAASPS SHCGSKTGKV SAPAPVSARK
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW

Arabidopsis Description

At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.