Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P16290_001 | Banana | nucleus | 47.82 | 44.41 |
| VIT_08s0007g02790.t01 | Wine grape | plastid | 34.03 | 29.64 |
| KRH67971 | Soybean | plastid | 34.03 | 29.55 |
| KRG96225 | Soybean | nucleus | 33.51 | 29.31 |
| VIT_06s0080g00930.t01 | Wine grape | plastid | 32.98 | 28.99 |
| Bra034827.1-P | Field mustard | plastid | 30.54 | 28.5 |
| CDY01038 | Canola | plastid | 30.19 | 28.36 |
| CDY08511 | Canola | plastid | 30.37 | 28.29 |
| AT3G11590.1 | Thale cress | plastid | 30.02 | 27.65 |
| Solyc10g083190.1.1 | Tomato | plastid | 31.41 | 27.23 |
| Bra001412.1-P | Field mustard | nucleus | 16.4 | 27.09 |
| PGSC0003DMT400072353 | Potato | plastid | 30.72 | 26.87 |
| CDX73866 | Canola | cytosol | 16.58 | 25.75 |
| CDY56601 | Canola | cytosol, golgi, plastid | 16.06 | 24.93 |
| Bra006620.1-P | Field mustard | nucleus | 19.55 | 24.83 |
| Solyc11g068720.1.1 | Tomato | nucleus | 27.23 | 24.61 |
| KRH25284 | Soybean | plastid | 28.27 | 24.58 |
| KRH30384 | Soybean | plastid | 27.92 | 24.17 |
| CDX70996 | Canola | nucleus | 19.9 | 24.0 |
| AT5G22310.1 | Thale cress | nucleus | 19.9 | 23.7 |
| CDX88802 | Canola | nucleus | 18.67 | 22.86 |
| PGSC0003DMT400067737 | Potato | nucleus | 22.69 | 22.77 |
| CDX92367 | Canola | mitochondrion, plastid | 19.02 | 22.71 |
| Bra002404.1-P | Field mustard | nucleus | 19.02 | 22.52 |
| CDY67997 | Canola | mitochondrion, plastid | 18.5 | 22.51 |
| HORVU2Hr1G069400.8 | Barley | nucleus | 19.55 | 22.0 |
| TraesCS2B01G299400.1 | Wheat | nucleus, plastid | 21.29 | 21.9 |
| Solyc06g074190.2.1 | Tomato | nucleus | 20.59 | 21.77 |
| TraesCS2A01G282200.1 | Wheat | nucleus | 21.47 | 21.73 |
| TraesCS2D01G281000.1 | Wheat | nucleus, plastid | 21.29 | 21.55 |
| EES11990 | Sorghum | nucleus | 20.94 | 21.13 |
| Zm00001d025208_P002 | Maize | nucleus | 21.47 | 20.99 |
| Zm00001d003996_P001 | Maize | nucleus | 20.42 | 20.56 |
| Os04t0382800-00 | Rice | nucleus | 20.24 | 20.32 |
| TraesCS7B01G035800.1 | Wheat | nucleus | 20.42 | 20.24 |
| PGSC0003DMT400015076 | Potato | nucleus | 20.07 | 20.21 |
| TraesCS7D01G134000.1 | Wheat | nucleus | 19.72 | 19.52 |
| TraesCS7A01G134600.1 | Wheat | nucleus | 19.55 | 19.34 |
| KXG30263 | Sorghum | mitochondrion | 20.94 | 19.29 |
| Os02t0506100-00 | Rice | plastid | 14.14 | 18.58 |
| Zm00001d000402_P001 | Maize | mitochondrion | 17.28 | 18.07 |
| GSMUA_Achr10P... | Banana | nucleus | 20.42 | 17.36 |
| GSMUA_Achr10P... | Banana | nucleus | 18.85 | 16.39 |
| GSMUA_Achr6P00380_001 | Banana | nucleus | 11.34 | 15.19 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 18.32 | 14.89 |
| GSMUA_Achr6P19720_001 | Banana | nucleus | 18.15 | 14.84 |
| GSMUA_Achr8P01540_001 | Banana | nucleus | 12.04 | 13.64 |
| GSMUA_Achr7P00230_001 | Banana | nucleus | 11.69 | 13.59 |
| GSMUA_Achr9P30230_001 | Banana | nucleus, plastid | 16.75 | 13.46 |
| GSMUA_Achr2P03040_001 | Banana | nucleus | 10.3 | 12.88 |
| GSMUA_Achr4P23750_001 | Banana | cytosol | 8.03 | 11.27 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P08260_001 | EnsemblPlants:GSMUA_Achr6T08260_001 | EnsemblPlantsGene:GSMUA_Achr6G08260_001 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF7 |
| SEG:seg | UniParc:UPI000296F3AC | UniProt:M0T575 | MapMan:35.2 | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G08260_001]
Coordinates
chr6:-:5496319..5499963
Molecular Weight (calculated)
64319.0 Da
IEP (calculated)
9.310
GRAVY (calculated)
-0.775
Length
573 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRHDSGVNE LLEGHGGIQK RFSSSPSSTS YMSKNYRFKR TVLVGKRKGS TTPVPLWRMN ARSPCSAASF SETSLHQPSK GGAKESQTSV SARKLANALW
101: ELNHTPSPEI IRDRHERKLP MDIMRKDRTS GSFGAGSLSY HLSNRLHSPI SELCNRPRSS SHRKMLPPVH QKFHCKEHNH VISDLLSKVD LMESEACFQG
201: LVPRSSLGGR KNYLKELQNG LVTSKELLKI LVHFCGIGKQ QPSAVSLATA LYCQLDRALV QVNQLIQEKR SDHTGIRYIM KQLVEEKEAW QNKKREGTKA
301: SLRSMIEELE TERKLRRRAE RISKKLEVEL SQLKNSLVDA GKELENERRT REIIEQSVAD GQDSDRQMQV VHPSRSSKLT NLTVDGRDTS GEKDQEENDG
401: TDSEDSDLHS IELNINNGYS WSHASGVTED ERKVALAKEH VSCGEFSSDR DMTKGNFARN FQHMDDNLDG GRPVGDSSLI DEAQMLDQIG DRYLSAEELR
501: DQTSAGSRIF LPHGLLNSTR QCIRQQASHS IGDQACVGSK VAEVVKAIRE SESKASLVRK NKIRSQLQMA TIQ
101: ELNHTPSPEI IRDRHERKLP MDIMRKDRTS GSFGAGSLSY HLSNRLHSPI SELCNRPRSS SHRKMLPPVH QKFHCKEHNH VISDLLSKVD LMESEACFQG
201: LVPRSSLGGR KNYLKELQNG LVTSKELLKI LVHFCGIGKQ QPSAVSLATA LYCQLDRALV QVNQLIQEKR SDHTGIRYIM KQLVEEKEAW QNKKREGTKA
301: SLRSMIEELE TERKLRRRAE RISKKLEVEL SQLKNSLVDA GKELENERRT REIIEQSVAD GQDSDRQMQV VHPSRSSKLT NLTVDGRDTS GEKDQEENDG
401: TDSEDSDLHS IELNINNGYS WSHASGVTED ERKVALAKEH VSCGEFSSDR DMTKGNFARN FQHMDDNLDG GRPVGDSSLI DEAQMLDQIG DRYLSAEELR
501: DQTSAGSRIF LPHGLLNSTR QCIRQQASHS IGDQACVGSK VAEVVKAIRE SESKASLVRK NKIRSQLQMA TIQ
001: MPRQNQSVEN LLLLGKIRKR GCSSPTSSTS SILREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPRAS GALHAAASPS SHCGSKTGKV SAPAPVSARK
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
Arabidopsis Description
At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.