Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
- nucleus 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P08980_001 | Banana | nucleus | 61.54 | 62.44 |
| Zm00001d020667_P001 | Maize | nucleus | 18.75 | 58.65 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 52.16 | 55.08 |
| Os02t0704600-01 | Rice | nucleus | 50.0 | 45.61 |
| OQU78405 | Sorghum | nucleus | 45.91 | 44.84 |
| Zm00001d038964_P001 | Maize | nucleus | 44.47 | 43.53 |
| OQU85551 | Sorghum | cytosol, plastid | 47.36 | 43.49 |
| TraesCS6D01G252200.1 | Wheat | nucleus | 46.63 | 43.21 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 47.12 | 43.17 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 46.88 | 43.14 |
| Bra037167.1-P | Field mustard | mitochondrion | 21.88 | 43.13 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 47.12 | 42.79 |
| CDX90677 | Canola | nucleus | 41.83 | 42.65 |
| CDX73773 | Canola | cytosol | 41.83 | 42.23 |
| Bra012880.1-P | Field mustard | nucleus | 41.35 | 42.16 |
| CDY28989 | Canola | nucleus | 41.59 | 41.29 |
| Bra036850.1-P | Field mustard | plastid | 41.11 | 41.2 |
| CDX77962 | Canola | nucleus, plastid | 40.62 | 40.72 |
| Zm00001d017768_P006 | Maize | cytosol | 46.39 | 40.63 |
| Zm00001d051562_P001 | Maize | plastid | 43.03 | 40.59 |
| KRH08190 | Soybean | nucleus | 40.87 | 38.99 |
| AT3G50910.1 | Thale cress | cytosol | 41.59 | 38.7 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 45.67 | 38.15 |
| KRH76747 | Soybean | plastid | 39.66 | 37.84 |
| KRH28715 | Soybean | cytosol | 35.58 | 36.1 |
| CDY18608 | Canola | nucleus | 31.49 | 36.09 |
| Solyc02g085000.2.1 | Tomato | nucleus | 38.7 | 34.85 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 39.42 | 34.1 |
| AT5G66480.1 | Thale cress | plastid | 35.82 | 33.56 |
| GSMUA_Achr3P24680_001 | Banana | mitochondrion | 12.02 | 32.05 |
| CDY67893 | Canola | nucleus | 25.96 | 31.3 |
| KRH69884 | Soybean | nucleus | 39.9 | 22.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P22980_001 | EnsemblPlants:GSMUA_Achr2T22980_001 | EnsemblPlantsGene:GSMUA_Achr2G22980_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR35490 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002966340 | UniProt:M0SAD9 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G22980_001]
Coordinates
chr2:+:21854958..21857925
Molecular Weight (calculated)
46325.5 Da
IEP (calculated)
5.253
GRAVY (calculated)
-0.703
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTFTAIALD RLLEPGSGMP MSPKPPPVPI KMVKGAQEAT TRRSNPRPNI RPALYATPET TPIPDAPWWF PPHSPYLINH KRRGRRLVKS VLQGQACSTG
101: PKPPDEEQKI EVMNGNGHDE EVQKAGHGQG SRGGSVVDES GGGELQDEHL GKGVIATEEM AKPLSEDPER DDDTENFFDL QDSLSTASNS EADDTCGRWK
201: PITPLGEYYD AFDDILSDGS ARSSYPNVED ELREMRLNVL MEIEKRTQAE EALANLQNQW QRLSHRLSLV GLKLPTPPTV PEAVDVPANL HPAEELYQQV
301: VVARFVADAV GRGCARAKVQ LEMETQIASK NFEIARLSDR LQYYEAANKE MSQRNQEAIE MARRQRNWRK RRQRWFWGSI GVAITLGGAA IAWSYLPVSI
401: SKPTPSEVDT TSSHEQ
101: PKPPDEEQKI EVMNGNGHDE EVQKAGHGQG SRGGSVVDES GGGELQDEHL GKGVIATEEM AKPLSEDPER DDDTENFFDL QDSLSTASNS EADDTCGRWK
201: PITPLGEYYD AFDDILSDGS ARSSYPNVED ELREMRLNVL MEIEKRTQAE EALANLQNQW QRLSHRLSLV GLKLPTPPTV PEAVDVPANL HPAEELYQQV
301: VVARFVADAV GRGCARAKVQ LEMETQIASK NFEIARLSDR LQYYEAANKE MSQRNQEAIE MARRQRNWRK RRQRWFWGSI GVAITLGGAA IAWSYLPVSI
401: SKPTPSEVDT TSSHEQ
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.