Factsheet for GSMUA_Achr10P06540_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P18230_001
GSMUA_Achr5P13650_001
GSMUA_Achr8P00060_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	GSMUA_Achr3P18230_001	AT4G00720.1	21798944
AT3G60200.1	GSMUA_Achr5P13650_001	AT4G00720.1	21798944
AT3G60200.1	GSMUA_Achr8P00060_001	AT4G00720.1	21798944
AT3G60200.1	GSMUA_Achr11P...	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P04810_001	Banana	nucleus	60.27	59.66
GSMUA_Achr3P27500_001	Banana	cytosol	43.84	42.52
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	23.97	33.18
CDY23445	Canola	nucleus	26.71	31.84
KRH00975	Soybean	nucleus	32.53	31.56
KRH40251	Soybean	cytosol	33.22	31.19
CDY30478	Canola	nucleus	26.37	31.17
Bra037642.1-P	Field mustard	nucleus	26.03	30.89
CDY48240	Canola	plastid	28.42	30.07
Bra004849.1-P	Field mustard	plastid	28.08	29.18
CDX74671	Canola	plastid	28.08	29.18
VIT_15s0021g00520.t01	Wine grape	nucleus	30.14	29.04
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	26.71	28.78
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	26.71	28.68
KRH48907	Soybean	nucleus	27.05	28.62
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	30.14	28.57
PGSC0003DMT400004234	Potato	nucleus	30.48	28.53
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	26.37	28.21
CDX98409	Canola	nucleus	22.6	27.39
CDY42673	Canola	nucleus	27.05	27.34
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	29.11	27.16
CDX89054	Canola	cytosol	27.05	27.15
KRH66386	Soybean	mitochondrion	6.51	27.14
Bra003403.1-P	Field mustard	cytosol	22.6	26.83
Bra014506.1-P	Field mustard	cytosol	26.71	26.8
CDY64077	Canola	cytosol	21.92	26.12
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	26.71	25.57

Protein Annotations

EnsemblPlants:GSMUA_Achr10P06540_001	EnsemblPlants:GSMUA_Achr10T06540_001	EnsemblPlantsGene:GSMUA_Achr10G06540_001	InterPro:UPF0503	PANTHER:PTHR35486	PFAM:PF05340
SEG:seg	UniParc:UPI000296BA01	UniProt:M0RFY1	MapMan:35.2	:	:

Description

transposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G06540_001]

Coordinates

chr10:+:16876846..16877724

Molecular Weight (calculated)

32316.9 Da

IEP (calculated)

11.107

GRAVY (calculated)

-0.868

Length

292 amino acids

Sequence
(BLAST)

001: MKCKSHPYEQ GVGVCASCLR ERLLALVAAQ NELSANHHRR RRSDPPPQPP PPLVFPRSSS PYVSHRRSVG FDASPAHPHP HHNTRFFSTP QVGPTFGDAA
101: DGGRFGEISG GRRRRFSFRT FFGHHRSDEA EPGLGAPKAS APGSWFSALI RGRRKKAHLS SATDEEEEAP PVGARRSRRT VERGMPPTME YEDDNDDGNG
201: YTSDKCRRRP TPTPMRLFPA AHRPHRSISA VSGFSACLSP LVRFRSDARR SHTAEPEISR DISSPSYPIQ HWNPAALGPN LSRNVAASKK LK

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.