Factsheet for GSMUA_Achr2P04810_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P18230_001
GSMUA_Achr5P13650_001
GSMUA_Achr8P00060_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	GSMUA_Achr3P18230_001	AT4G00720.1	21798944
AT3G60200.1	GSMUA_Achr5P13650_001	AT4G00720.1	21798944
AT3G60200.1	GSMUA_Achr8P00060_001	AT4G00720.1	21798944
AT3G60200.1	GSMUA_Achr11P...	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	59.66	60.27
GSMUA_Achr3P27500_001	Banana	cytosol	46.1	45.18
KRH66386	Soybean	mitochondrion	9.15	38.57
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	24.41	34.12
PGSC0003DMT400004234	Potato	nucleus	35.59	33.65
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	34.58	33.12
CDY23445	Canola	nucleus	27.46	33.06
KRH00975	Soybean	nucleus	33.56	32.89
KRH40251	Soybean	cytosol	34.58	32.8
Bra037642.1-P	Field mustard	nucleus	26.78	32.11
CDY30478	Canola	nucleus	26.44	31.58
CDY48240	Canola	plastid	29.49	31.52
VIT_15s0021g00520.t01	Wine grape	nucleus	31.86	31.02
KRH48907	Soybean	nucleus	28.47	30.43
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	27.8	30.26
CDX74671	Canola	plastid	28.81	30.25
Bra004849.1-P	Field mustard	plastid	28.81	30.25
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	27.46	29.78
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	31.53	29.71
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	27.46	29.67
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	30.17	29.18
CDY42673	Canola	nucleus	27.46	28.03
CDX89054	Canola	cytosol	27.12	27.49
Bra014506.1-P	Field mustard	cytosol	27.12	27.49
Bra003403.1-P	Field mustard	cytosol	22.71	27.24
CDX98409	Canola	nucleus	22.03	26.97
CDY64077	Canola	cytosol	22.37	26.94

Protein Annotations

EnsemblPlants:GSMUA_Achr2P04810_001	EnsemblPlants:GSMUA_Achr2T04810_001	EnsemblPlantsGene:GSMUA_Achr2G04810_001	InterPro:UPF0503	PANTHER:PTHR35486	PFAM:PF05340
SEG:seg	UniParc:UPI000295FFF7	UniProt:M0S572	MapMan:35.2	:	:

Description

transposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G04810_001]

Coordinates

chr2:+:10127865..10128984

Molecular Weight (calculated)

33257.3 Da

IEP (calculated)

11.199

GRAVY (calculated)

-0.800

Length

295 amino acids

Sequence
(BLAST)

001: MKCKSHPNEY GVGVCASCLR ERLLALIVAQ NELSANRYHV RRRPDLSPLR HPHEFHRPVS PYISHRRSVG SDSSPGHLRL LHHYQRFFST PQIGPTFAAA
101: SRGERLEEID GGRRHRFSIF RTLFGHSRSD AAEPGLRAPK ESASGSWFSA LIRGRRKKKK TTQLSSGAEE EEEAPPWRVR RSCRPVGRGM SPAMEDEDED
201: HGSGYFSDDW RRPTPMPIRR FPATHRDHRS VSSVSGFSVC LSPLVSFGPE SRRSHPAEAV FSGDLRSPAN SIHHRNPAVL APNRSRKLAD LGRLK

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.