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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • cytosol 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000961.1-P
Bra009783.1-P
Bra009916.1-P
Bra010714.1-P
Bra020466.1-P
Bra033597.1-P
Bra036593.1-P
Bra037354.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60200.1 Bra000961.1-P AT4G00720.1 21798944
AT3G60200.1 Bra037354.1-P AT4G00720.1 21798944
AT3G60200.1 Bra010714.1-P AT4G39050.1 21798944
AT3G60200.1 Bra033597.1-P AT4G39050.1 21798944
AT3G60200.1 Bra009783.1-P AT5G24660.1 21798944
AT3G60200.1 Bra020466.1-P AT5G24660.1 21798944
AT3G60200.1 Bra009916.1-P AT5G26751.1 21798944
AT3G60200.1 Bra036593.1-P AT5G26751.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY41187 Canola cytosol, mitochondrion, nucleus, plastid 97.07 97.43
AT3G60200.1 Thale cress cytosol, mitochondrion, nucleus, plastid 70.7 63.28
Bra014506.1-P Field mustard cytosol 65.93 61.86
Bra003403.1-P Field mustard cytosol 53.48 59.35
Bra004849.1-P Field mustard plastid 50.18 48.75
Bra037642.1-P Field mustard nucleus 41.76 46.34
KRH66386 Soybean mitochondrion 10.62 41.43
VIT_15s0021g00520.t01 Wine grape nucleus 43.22 38.94
KRH40251 Soybean cytosol 41.39 36.33
Solyc01g088530.2.1 Tomato mitochondrion, nucleus 40.66 36.04
PGSC0003DMT400004234 Potato nucleus 41.03 35.9
KRH00975 Soybean nucleus 39.56 35.88
KRH48907 Soybean nucleus 34.8 34.42
TraesCS6D01G243600.1 Wheat mitochondrion, nucleus 35.16 33.68
TraesCS6B01G290200.1 Wheat mitochondrion, nucleus 34.8 32.99
Os02t0689500-01 Rice cytosol, mitochondrion, nucleus, plastid 34.8 32.76
TraesCS2B01G473100.1 Wheat cytosol 33.33 32.62
TraesCS2D01G451800.1 Wheat nucleus 33.7 32.51
TraesCS6A01G263100.1 Wheat mitochondrion, nucleus 34.07 32.18
Os04t0588000-00 Rice nucleus 17.58 31.58
Zm00001d017657_P001 Maize nucleus 32.6 31.34
TraesCS2A01G452000.1 Wheat cytosol, mitochondrion, nucleus, plastid 32.6 31.23
Zm00001d002512_P001 Maize cytosol 32.6 31.01
Zm00001d051505_P001 Maize nucleus 32.23 30.24
Zm00001d047060_P001 Maize nucleus 25.27 29.74
EES12746 Sorghum nucleus 31.87 29.39
EES05698 Sorghum nucleus 32.97 29.32
GSMUA_Achr3P27500_001 Banana cytosol 31.5 28.57
GSMUA_AchrUn_... Banana cytosol, mitochondrion, nucleus, plastid 21.98 28.44
GSMUA_Achr2P04810_001 Banana nucleus 29.67 27.46
HORVU1Hr1G054570.1 Barley nucleus 26.74 26.94
GSMUA_Achr10P... Banana nucleus 28.21 26.37
Zm00001d030004_P001 Maize mitochondrion, nucleus 28.57 26.17
TraesCS1A01G214000.1 Wheat mitochondrion, nucleus 26.74 25.98
Os10t0567600-01 Rice plasma membrane 27.47 25.68
TraesCS1D01G216900.1 Wheat mitochondrion, nucleus 26.01 24.74
TraesCS1B01G227800.1 Wheat nucleus 24.91 24.2
EER91903 Sorghum nucleus 27.84 23.46
HORVU7Hr1G082390.1 Barley nucleus 24.18 19.41
Protein Annotations
EnsemblPlants:Bra007514.1EnsemblPlants:Bra007514.1-PEnsemblPlantsGene:Bra007514PANTHER:PTHR35486SEG:segUniParc:UPI0002542FBA
UniProt:M4CTH1MapMan:35.2::::
Description
AT3G60200 (E=1e-045) | unknown protein
Coordinates
chrA09:+:29580303..29581124
Molecular Weight (calculated)
29966.3 Da
IEP (calculated)
10.835
GRAVY (calculated)
-0.688
Length
273 amino acids
Sequence
(BLAST)
001: MRCKRHTVDL SSTAGVCASC LRERLLSLAA SAAVTEDDNQ SRKSNNLIFP RSVSPYVARR KSDAGGGGGG LNRRFITTPQ VDTGFSCKDF ESNRSSKPRS
101: GKASRLSSLF RARSDDFDSD TKSRVSCSSS SSSRSWISSF LSKKQPTACY IEDVISARRP QRVYCRGMSP ARDTEAEEEE NEPRRTPAMK TPGRRNIAAG
201: IGRSISGMGF CLSPLVRASP NCPFKRKIRF PSEFNGNGSE VTVPEKPHIA EAASFCANRS KKLVDIGRVN HRR
Best Arabidopsis Sequence Match ( AT3G60200.1 )
(BLAST)
001: MRCKRHTVDL SSSNGVCASC LRERLLSLAA SAAVSAAVED NQSKKSNNNN HPPLLIFPRS VSPYVTRRKS DAGAGGGDPL VSSNRRFITT PQIDLVGYSC
101: KDFESNRSNK SKQGKKVSRF SNLFRARSED FDTNPKSNNP RFSSCDASEI SSSSSSSRSW ISTILSTGRR KKQPTTACYI EDVIAARRPQ RIYCRGMSPV
201: RDTEPEQSAE SIEELRRTPA TKTPGRRKIA MGIGKSMSGM AFCLSPLVRA SPNCPFKRKM RFPSEFGNSG EVTAVPEKPH ISAAASFCAN RSKKLVDLGR
301: VDRRR
Arabidopsis Description
Uncharacterized protein At3g60200 [Source:UniProtKB/TrEMBL;Acc:Q9M1C3]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.