Factsheet for TraesCS1D01G216900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G125000.1
TraesCS1A01G177600.1
TraesCS1A01G189000.1
TraesCS1B01G142300.1
TraesCS1B01G196700.3
TraesCS1B01G202600.1
TraesCS1B01G361800.1
TraesCS1D01G129000.2
TraesCS1D01G176100.1
TraesCS1D01G187400.1
TraesCS3A01G136500.1
TraesCS3D01G137200.1
TraesCS4A01G361100.1
TraesCS4A01G365100.1
TraesCS5A01G259000.1
TraesCS5B01G230700.1
TraesCS5B01G511800.1
TraesCS5D01G512300.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	TraesCS1A01G125000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G142300.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G361800.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1D01G129000.2	AT1G06390.1	21798944
AT3G60200.1	TraesCS3A01G136500.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS3D01G137200.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS4A01G365100.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5A01G259000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5B01G230700.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1A01G189000.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1B01G196700.3	AT4G00720.1	21798944
AT3G60200.1	TraesCS1D01G187400.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1D01G176100.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS4A01G361100.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5B01G511800.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5D01G512300.2	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G227800.1	Wheat	nucleus	91.29	93.24
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	90.94	92.88
HORVU1Hr1G054570.1	Barley	nucleus	85.71	90.77
HORVU7Hr1G082390.1	Barley	nucleus	80.49	67.94
Os10t0567600-01	Rice	plasma membrane	64.81	63.7
Zm00001d047060_P001	Maize	nucleus	46.69	57.76
EER91903	Sorghum	nucleus	63.41	56.17
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	38.33	38.6
TraesCS2D01G451800.1	Wheat	nucleus	36.59	37.1
KRH66386	Soybean	mitochondrion	8.71	35.71
KRH40251	Soybean	cytosol	31.71	29.26
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	21.25	28.91
KRH00975	Soybean	nucleus	30.31	28.9
PGSC0003DMT400004234	Potato	nucleus	29.62	27.24
VIT_15s0021g00520.t01	Wine grape	nucleus	28.57	27.06
Bra003403.1-P	Field mustard	cytosol	23.0	26.83
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	28.57	26.62
CDX98409	Canola	nucleus	22.3	26.56
CDY64077	Canola	cytosol	22.3	26.12
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	24.74	26.1
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	24.74	26.01
KRH48907	Soybean	nucleus	24.74	25.72
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	24.04	25.46
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	26.48	24.92
Bra014506.1-P	Field mustard	cytosol	24.39	24.05
CDY48240	Canola	plastid	23.0	23.91
Bra004849.1-P	Field mustard	plastid	23.34	23.84
CDX74671	Canola	plastid	23.34	23.84
CDX89054	Canola	cytosol	24.04	23.71
Bra037642.1-P	Field mustard	nucleus	20.21	23.58
CDY42673	Canola	nucleus	23.69	23.53
CDY30478	Canola	nucleus	19.16	22.27
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	24.04	22.04
CDY23445	Canola	nucleus	18.47	21.63

Protein Annotations

EnsemblPlants:TraesCS1D01G216900.1	EnsemblPlantsGene:TraesCS1D01G216900	InterPro:UPF0503	PANTHER:PTHR35486	PFAM:PF05340	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:302691061..302691924

Molecular Weight (calculated)

30864.8 Da

IEP (calculated)

11.845

GRAVY (calculated)

-0.894

Length

287 amino acids

Sequence
(BLAST)

001: MRCKLHPYAN ALGVCAPCLR DRLLVLAAER DRAGAGASSG ADCSSSSSRG SSPARGRAAS PFAAAAAAPA QQHRRSDACA YTSSRHSHSH RPELLFFSTP
101: QVGPATRAAD DEPRESERKK SFHRRRSFLA ALFGGGRRGG REEESESKKD PPRRSTSWLS AIVRRKRRPD ASSSSSLPRP VDEEPESPGG STSSSWWFPS
201: PSPARHHHHP QRRSRPGGSG ASGDGISGFA VCLSPLVRPS SGGPRRRCQQ PDPSTLGESH RRHLSASSAA SFGRNTSRKL ADMGRFR

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.