Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G214000.1 | Wheat | mitochondrion, nucleus | 88.93 | 85.77 |
| TraesCS1D01G216900.1 | Wheat | mitochondrion, nucleus | 90.77 | 85.71 |
| TraesCS1B01G227800.1 | Wheat | nucleus | 87.08 | 83.99 |
| HORVU7Hr1G082390.1 | Barley | nucleus | 87.45 | 69.71 |
| Os10t0567600-01 | Rice | plasma membrane | 65.68 | 60.96 |
| Zm00001d047060_P001 | Maize | nucleus | 49.82 | 58.19 |
| EER91903 | Sorghum | nucleus | 65.31 | 54.63 |
| KRH66386 | Soybean | mitochondrion | 8.86 | 34.29 |
| KRH00975 | Soybean | nucleus | 32.84 | 29.57 |
| KRH40251 | Soybean | cytosol | 33.58 | 29.26 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 22.14 | 28.44 |
| VIT_15s0021g00520.t01 | Wine grape | nucleus | 30.63 | 27.39 |
| PGSC0003DMT400004234 | Potato | nucleus | 31.37 | 27.24 |
| CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 26.94 | 26.84 |
| Bra007514.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 26.94 | 26.74 |
| Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 30.26 | 26.62 |
| CDX71830 | Canola | cytosol, mitochondrion, nucleus, plastid | 26.2 | 26.2 |
| KRH48907 | Soybean | nucleus | 26.57 | 26.09 |
| CDX98409 | Canola | nucleus | 22.88 | 25.73 |
| Bra003403.1-P | Field mustard | cytosol | 23.25 | 25.61 |
| CDY64077 | Canola | cytosol | 22.88 | 25.31 |
| AT3G60200.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 28.04 | 24.92 |
| Bra037642.1-P | Field mustard | nucleus | 22.14 | 24.39 |
| CDY48240 | Canola | plastid | 24.72 | 24.28 |
| CDX74671 | Canola | plastid | 25.09 | 24.2 |
| Bra004849.1-P | Field mustard | plastid | 25.09 | 24.2 |
| Bra014506.1-P | Field mustard | cytosol | 25.46 | 23.71 |
| CDY42673 | Canola | nucleus | 25.09 | 23.53 |
| CDX89054 | Canola | cytosol | 25.09 | 23.37 |
| CDY30478 | Canola | nucleus | 21.03 | 23.08 |
| CDY23445 | Canola | nucleus | 20.3 | 22.45 |
| AT2G44600.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 25.83 | 22.36 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G054570.1 | EnsemblPlantsGene:HORVU1Hr1G054570 | InterPro:UPF0503 | PANTHER:PTHR35486 | PFAM:PF05340 | SEG:seg |
| UniParc:UPI000B48461A | UniProt:A0A287FNQ3 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:402963156..402964948
Molecular Weight (calculated)
29315.1 Da
IEP (calculated)
11.790
GRAVY (calculated)
-0.935
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCKLHPYAN ALGVCAPCLR DRLLVLAAER DRAGAGADCS SSSSSRGSSP TRVAAAPAQQ HRRSDACAYT SSRHSNSHRP ELLFFSTPQV GPATRAADDE
101: PRESERKKSF HRRRSFLAAL FGGGRRGGRE EESEGKKDPP RRSTSWLSAI VRRKRRPDAP SSSLPRPADE EPESPGGSTS SSWWFPSPSP ARHHQRRSRP
201: GGSGASGDGI SGFAVCLSPL VRPSSGGPRR RCQQPDPSTL GESHRRHLSA SSAASLGRNT SRKLADMGRF R
101: PRESERKKSF HRRRSFLAAL FGGGRRGGRE EESEGKKDPP RRSTSWLSAI VRRKRRPDAP SSSLPRPADE EPESPGGSTS SSWWFPSPSP ARHHQRRSRP
201: GGSGASGDGI SGFAVCLSPL VRPSSGGPRR RCQQPDPSTL GESHRRHLSA SSAASLGRNT SRKLADMGRF R
001: MRCKRHTVDL SSSNGVCASC LRERLLSLAA SAAVSAAVED NQSKKSNNNN HPPLLIFPRS VSPYVTRRKS DAGAGGGDPL VSSNRRFITT PQIDLVGYSC
101: KDFESNRSNK SKQGKKVSRF SNLFRARSED FDTNPKSNNP RFSSCDASEI SSSSSSSRSW ISTILSTGRR KKQPTTACYI EDVIAARRPQ RIYCRGMSPV
201: RDTEPEQSAE SIEELRRTPA TKTPGRRKIA MGIGKSMSGM AFCLSPLVRA SPNCPFKRKM RFPSEFGNSG EVTAVPEKPH ISAAASFCAN RSKKLVDLGR
301: VDRRR
101: KDFESNRSNK SKQGKKVSRF SNLFRARSED FDTNPKSNNP RFSSCDASEI SSSSSSSRSW ISTILSTGRR KKQPTTACYI EDVIAARRPQ RIYCRGMSPV
201: RDTEPEQSAE SIEELRRTPA TKTPGRRKIA MGIGKSMSGM AFCLSPLVRA SPNCPFKRKM RFPSEFGNSG EVTAVPEKPH ISAAASFCAN RSKKLVDLGR
301: VDRRR
Arabidopsis Description
Uncharacterized protein At3g60200 [Source:UniProtKB/TrEMBL;Acc:Q9M1C3]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.