CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90477
KRG96686
KRH00638
KRH16959
KRH22265
KRH24392
KRH25797
KRH27067
KRH29374
KRH33767
KRH40543
KRH48234
KRH51475
KRH53667
KRH55721
KRH60786
KRH64261
KRH65140
KRH68409

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	KRH22265	AT1G06390.1	21798944
AT3G60200.1	KRH25797	AT1G06390.1	21798944
AT3G60200.1	KRH27067	AT1G06390.1	21798944
AT3G60200.1	KRH55721	AT1G06390.1	21798944
AT3G60200.1	KRH00638	AT4G00720.1	21798944
AT3G60200.1	KRH40543	AT4G00720.1	21798944
AT3G60200.1	KRH48234	AT4G00720.1	21798944
AT3G60200.1	KRH65140	AT4G00720.1	21798944
AT3G60200.1	KRH24392	AT4G39050.1	21798944
AT3G60200.1	KRH29374	AT4G39050.1	21798944
AT3G60200.1	KRH51475	AT4G39050.1	21798944
AT3G60200.1	KRH60786	AT4G39050.1	21798944
AT3G60200.1	KRH16959	AT5G24660.1	21798944
AT3G60200.1	KRH53667	AT5G24660.1	21798944
AT3G60200.1	KRH64261	AT5G24660.1	21798944
AT3G60200.1	KRG90477	AT5G26751.1	21798944
AT3G60200.1	KRG96686	AT5G26751.1	21798944
AT3G60200.1	KRH33767	AT5G26751.1	21798944
AT3G60200.1	KRH68409	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40251	Soybean	cytosol	90.03	87.14
KRH66386	Soybean	mitochondrion	13.29	57.14
VIT_15s0021g00520.t01	Wine grape	nucleus	47.84	47.52
PGSC0003DMT400004234	Potato	nucleus	45.85	44.23
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	44.85	43.83
KRH48907	Soybean	nucleus	39.87	43.48
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	36.54	40.44
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	36.21	40.22
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	35.88	39.56
Bra004849.1-P	Field mustard	plastid	36.88	39.5
CDX74671	Canola	plastid	36.88	39.5
CDY48240	Canola	plastid	35.88	39.13
CDX98409	Canola	nucleus	30.9	38.59
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	38.54	38.03
CDY64077	Canola	cytosol	30.23	37.14
Bra003403.1-P	Field mustard	cytosol	30.23	36.99
CDY23445	Canola	nucleus	29.9	36.73
Zm00001d017657_P001	Maize	nucleus	34.55	36.62
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	33.89	35.79
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	37.21	35.78
CDY42673	Canola	nucleus	34.22	35.64
Bra037642.1-P	Field mustard	nucleus	28.9	35.37
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	33.55	35.07
Bra014506.1-P	Field mustard	cytosol	33.89	35.05
TraesCS6A01G263100.1	Wheat	mitochondrion, nucleus	33.22	34.6
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	33.22	34.48
CDY30478	Canola	nucleus	28.24	34.41
CDX89054	Canola	cytosol	33.22	34.36
EES05698	Sorghum	nucleus	34.55	33.88
TraesCS2D01G451800.1	Wheat	nucleus	31.56	33.57
GSMUA_Achr2P04810_001	Banana	nucleus	32.89	33.56
Os04t0588000-00	Rice	nucleus	16.94	33.55
Zm00001d047060_P001	Maize	nucleus	25.58	33.19
Zm00001d002512_P001	Maize	cytosol	31.56	33.1
HORVU1Hr1G054570.1	Barley	nucleus	29.57	32.84
Zm00001d051505_P001	Maize	nucleus	31.56	32.65
GSMUA_Achr10P...	Banana	nucleus	31.56	32.53
EES12746	Sorghum	nucleus	31.89	32.43
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	30.23	31.93
GSMUA_Achr3P27500_001	Banana	cytosol	31.89	31.89
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	29.24	31.32
TraesCS1B01G227800.1	Wheat	nucleus	28.9	30.96
Zm00001d030004_P001	Maize	mitochondrion, nucleus	30.56	30.87
TraesCS2B01G473100.1	Wheat	cytosol	28.57	30.82
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	21.59	30.81
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	28.9	30.31
Os10t0567600-01	Rice	plasma membrane	28.57	29.45
EER91903	Sorghum	nucleus	29.57	27.47
HORVU7Hr1G082390.1	Barley	nucleus	28.24	25.0

Protein Annotations

EMBL:ACUP02011485	EnsemblPlants:KRH00975	EnsemblPlantsGene:GLYMA_18G245700	EntrezGene:102668087	PANTHER:PTHR35486	ProteinID:KRH00975
ProteinID:KRH00975.1	SEG:seg	UniParc:UPI0001876716	UniProt:I1N422	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr18:+:53338147..53339741

Molecular Weight (calculated)

33692.3 Da

IEP (calculated)

10.900

GRAVY (calculated)

-0.799

Length

301 amino acids

Sequence
(BLAST)

001: MKCKKHTSDL SSTVGVCASC LRERLIALVA ARVISRASDE YSRNSDPNPP PPLIFPRSVS PYVSRRKPDY AAAWHDDRRD RLFYSTPQLG PTFCAGDSAY
101: HADAKSFKKR FNKFRIFAKI FRTRSEKFQS DPSCEQASYA SPSWFSAFFP TRRRNKDRTG TTEEYSSSAP RRRYRPSDRG MSPVTTEDFG DECDQSPSGS
201: GYVSEASPWW RRSPTVAPSA RRSRLGHTKS SSGSGMALWL SPLVRASPNR RWNHKGLPPE MAAAAEVRAA AAKPHLSAAA SFCANRSRKL ADFGRVNNHN
301: R

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.