Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74671 | Canola | plastid | 92.39 | 90.75 |
| CDY30478 | Canola | nucleus | 54.35 | 60.73 |
| CDY23445 | Canola | nucleus | 52.9 | 59.59 |
| AT2G44600.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 63.04 | 55.59 |
| CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 51.09 | 51.84 |
| CDX71830 | Canola | cytosol, mitochondrion, nucleus, plastid | 49.64 | 50.55 |
| CDX98409 | Canola | nucleus | 41.3 | 47.3 |
| KRH66386 | Soybean | mitochondrion | 11.96 | 47.14 |
| CDY42673 | Canola | nucleus | 48.19 | 46.02 |
| CDY64077 | Canola | cytosol | 40.58 | 45.71 |
| CDX89054 | Canola | cytosol | 46.38 | 43.99 |
| VIT_15s0021g00520.t01 | Wine grape | nucleus | 42.75 | 38.94 |
| Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 42.03 | 37.66 |
| PGSC0003DMT400004234 | Potato | nucleus | 42.03 | 37.18 |
| KRH00975 | Soybean | nucleus | 39.13 | 35.88 |
| KRH40251 | Soybean | cytosol | 40.22 | 35.69 |
| KRH48907 | Soybean | nucleus | 33.7 | 33.7 |
| Os04t0588000-00 | Rice | nucleus | 18.12 | 32.89 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 24.28 | 31.75 |
| TraesCS2B01G473100.1 | Wheat | cytosol | 30.8 | 30.47 |
| TraesCS2D01G451800.1 | Wheat | nucleus | 30.8 | 30.04 |
| TraesCS6D01G243600.1 | Wheat | mitochondrion, nucleus | 30.8 | 29.82 |
| GSMUA_Achr2P04810_001 | Banana | nucleus | 31.52 | 29.49 |
| Zm00001d002512_P001 | Maize | cytosol | 30.43 | 29.27 |
| TraesCS2A01G452000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 30.07 | 29.12 |
| TraesCS6A01G263100.1 | Wheat | mitochondrion, nucleus | 30.43 | 29.07 |
| EES12746 | Sorghum | nucleus | 30.8 | 28.72 |
| Os02t0689500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 30.07 | 28.62 |
| Zm00001d051505_P001 | Maize | nucleus | 30.07 | 28.52 |
| TraesCS6B01G290200.1 | Wheat | mitochondrion, nucleus | 29.71 | 28.47 |
| GSMUA_Achr10P... | Banana | nucleus | 30.07 | 28.42 |
| Zm00001d017657_P001 | Maize | nucleus | 28.26 | 27.46 |
| EES05698 | Sorghum | nucleus | 29.71 | 26.71 |
| GSMUA_Achr3P27500_001 | Banana | cytosol | 28.99 | 26.58 |
| Zm00001d047060_P001 | Maize | nucleus | 21.38 | 25.43 |
| HORVU1Hr1G054570.1 | Barley | nucleus | 24.28 | 24.72 |
| Zm00001d030004_P001 | Maize | mitochondrion, nucleus | 26.45 | 24.5 |
| Os10t0567600-01 | Rice | plasma membrane | 25.36 | 23.97 |
| TraesCS1A01G214000.1 | Wheat | mitochondrion, nucleus | 24.28 | 23.84 |
| TraesCS1B01G227800.1 | Wheat | nucleus | 23.91 | 23.49 |
| TraesCS1D01G216900.1 | Wheat | mitochondrion, nucleus | 23.91 | 23.0 |
| EER91903 | Sorghum | nucleus | 26.09 | 22.22 |
| HORVU7Hr1G082390.1 | Barley | nucleus | 23.19 | 18.82 |
Protein Annotations
| EnsemblPlants:CDY48240 | EnsemblPlantsGene:GSBRNA2T00089104001 | PANTHER:PTHR35486 | ProteinID:CDY48240 | ProteinID:CDY48240.1 | SEG:seg |
| UniParc:UPI0004EBCC13 | UniProt:A0A078IBH6 | MapMan:35.2 | : | : | : |
Description
BnaC04g04990DBnaC04g04990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBH6]
Coordinates
chrLK032762:+:17997..19159
Molecular Weight (calculated)
30260.0 Da
IEP (calculated)
11.063
GRAVY (calculated)
-0.617
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCKRHIVDF SSSIGVCASC LRERLFSLAA STAASERISP PPRPLVFPRS VSPYVSARKS DAGRDNNNSL ASSHNRFFPT PQVTSTGGVG GGSSEKVFDS
101: GRSYKKKQSK LSRFSSLFRS RSDEFYASTS SSSRSWLSKV LSVRSKKPSP NDTCYIEDLI ASESSHRPRQ RYCRGMSPAT VDYEETPERV KRTPAAAMMG
201: TPGRRKTAMI GTGMGFCLSP LVRAKPSNWK GKLPPEFGYA AGEMKSPARP HISTAASFCA NRSKKLVDLG RVDPRR
101: GRSYKKKQSK LSRFSSLFRS RSDEFYASTS SSSRSWLSKV LSVRSKKPSP NDTCYIEDLI ASESSHRPRQ RYCRGMSPAT VDYEETPERV KRTPAAAMMG
201: TPGRRKTAMI GTGMGFCLSP LVRAKPSNWK GKLPPEFGYA AGEMKSPARP HISTAASFCA NRSKKLVDLG RVDPRR
001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
Arabidopsis Description
At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.