Factsheet for TraesCS6D01G243600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G125000.1
TraesCS1A01G177600.1
TraesCS1A01G189000.1
TraesCS1B01G142300.1
TraesCS1B01G196700.3
TraesCS1B01G202600.1
TraesCS1B01G361800.1
TraesCS1D01G129000.2
TraesCS1D01G176100.1
TraesCS1D01G187400.1
TraesCS3A01G136500.1
TraesCS3D01G137200.1
TraesCS4A01G361100.1
TraesCS4A01G365100.1
TraesCS5A01G259000.1
TraesCS5B01G230700.1
TraesCS5B01G511800.1
TraesCS5D01G512300.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	TraesCS1A01G125000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G142300.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G361800.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1D01G129000.2	AT1G06390.1	21798944
AT3G60200.1	TraesCS3A01G136500.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS3D01G137200.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS4A01G365100.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5A01G259000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5B01G230700.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1A01G189000.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1B01G196700.3	AT4G00720.1	21798944
AT3G60200.1	TraesCS1D01G187400.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1D01G176100.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS4A01G361100.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5B01G511800.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5D01G512300.2	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	94.39	93.4
TraesCS6A01G263100.1	Wheat	mitochondrion, nucleus	90.53	89.27
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	74.04	72.76
Zm00001d017657_P001	Maize	nucleus	70.53	70.77
EES05698	Sorghum	nucleus	69.12	64.17
Zm00001d051505_P001	Maize	nucleus	63.86	62.54
TraesCS2D01G451800.1	Wheat	nucleus	54.39	54.77
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	38.6	38.33
KRH66386	Soybean	mitochondrion	9.12	37.14
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	33.68	35.29
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	33.68	35.16
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	32.98	34.69
KRH00975	Soybean	nucleus	35.79	33.89
KRH40251	Soybean	cytosol	36.49	33.44
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	24.56	33.18
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	34.74	32.14
VIT_15s0021g00520.t01	Wine grape	nucleus	34.04	32.01
PGSC0003DMT400004234	Potato	nucleus	34.74	31.73
KRH48907	Soybean	nucleus	30.53	31.52
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	33.33	31.15
CDY48240	Canola	plastid	29.82	30.8
CDX98409	Canola	nucleus	25.96	30.71
CDY64077	Canola	cytosol	26.32	30.61
CDX74671	Canola	plastid	30.18	30.61
Bra004849.1-P	Field mustard	plastid	30.18	30.61
CDX89054	Canola	cytosol	31.23	30.58
Bra014506.1-P	Field mustard	cytosol	30.88	30.24
CDY42673	Canola	nucleus	30.53	30.1
Bra003403.1-P	Field mustard	cytosol	25.96	30.08
CDY30478	Canola	nucleus	25.96	29.96
CDY23445	Canola	nucleus	24.56	28.57
Bra037642.1-P	Field mustard	nucleus	24.21	28.05
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	30.53	27.8

Protein Annotations

EnsemblPlants:TraesCS6D01G243600.1	EnsemblPlantsGene:TraesCS6D01G243600	InterPro:UPF0503	PANTHER:PTHR31659	PANTHER:PTHR31659:SF2	PFAM:PF05340
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:345789937..345790794

Molecular Weight (calculated)

30809.7 Da

IEP (calculated)

12.055

GRAVY (calculated)

-0.781

Length

285 amino acids

Sequence
(BLAST)

001: MGMRCKRHPF QAGGGVCATC LRDRLLVLAA AQNDASSPST PPATAPPPPA ETAAAPAFPR SVSPYVSRRK SDSSGGALRH HPSLLFFRTP QVGPAYGGSA
101: PLEEGDIGYQ KPRARKFSVL ATLFGNHRHR PEDKDKAKER KQSRSWLAGI IPRRRRKQVP ADAVLPASPP PRRSCRVVSN RGLSPERGSQ GSGEESSSPA
201: DPPWRPSPSP MRRTPCRRRQ TSSMPSGFAV CLSPLVRPSP GRRHRAAQPP DSSTFSSELR PSPLHSAASV GRCRSRKLAD GGRFR

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.