Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66386 | Soybean | mitochondrion | 12.21 | 52.86 |
| Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 53.47 | 52.6 |
| PGSC0003DMT400004234 | Potato | nucleus | 53.14 | 51.6 |
| KRH40251 | Soybean | cytosol | 49.17 | 47.91 |
| KRH00975 | Soybean | nucleus | 47.52 | 47.84 |
| CDX71830 | Canola | cytosol, mitochondrion, nucleus, plastid | 38.94 | 43.54 |
| CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 38.94 | 43.38 |
| Bra007514.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 38.94 | 43.22 |
| CDY48240 | Canola | plastid | 38.94 | 42.75 |
| CDX74671 | Canola | plastid | 38.28 | 41.28 |
| Bra004849.1-P | Field mustard | plastid | 37.95 | 40.93 |
| AT3G60200.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 40.59 | 40.33 |
| KRH48907 | Soybean | nucleus | 36.63 | 40.22 |
| AT2G44600.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 40.26 | 38.98 |
| CDX98409 | Canola | nucleus | 30.36 | 38.17 |
| CDY42673 | Canola | nucleus | 36.3 | 38.06 |
| Bra014506.1-P | Field mustard | cytosol | 35.97 | 37.46 |
| CDY64077 | Canola | cytosol | 30.03 | 37.14 |
| Zm00001d002512_P001 | Maize | cytosol | 34.98 | 36.93 |
| Bra003403.1-P | Field mustard | cytosol | 29.7 | 36.59 |
| CDX89054 | Canola | cytosol | 34.98 | 36.43 |
| Os04t0588000-00 | Rice | nucleus | 18.15 | 36.18 |
| CDY23445 | Canola | nucleus | 28.05 | 34.69 |
| Bra037642.1-P | Field mustard | nucleus | 28.05 | 34.55 |
| EES12746 | Sorghum | nucleus | 33.66 | 34.46 |
| CDY30478 | Canola | nucleus | 28.05 | 34.41 |
| TraesCS2B01G473100.1 | Wheat | cytosol | 31.68 | 34.41 |
| TraesCS6D01G243600.1 | Wheat | mitochondrion, nucleus | 32.01 | 34.04 |
| TraesCS2D01G451800.1 | Wheat | nucleus | 31.68 | 33.92 |
| Zm00001d017657_P001 | Maize | nucleus | 31.68 | 33.8 |
| Os02t0689500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 32.34 | 33.79 |
| TraesCS6B01G290200.1 | Wheat | mitochondrion, nucleus | 31.68 | 33.33 |
| TraesCS2A01G452000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 31.35 | 33.33 |
| TraesCS6A01G263100.1 | Wheat | mitochondrion, nucleus | 31.02 | 32.53 |
| Zm00001d051505_P001 | Maize | nucleus | 31.02 | 32.3 |
| EES05698 | Sorghum | nucleus | 32.67 | 32.25 |
| Zm00001d047060_P001 | Maize | nucleus | 24.42 | 31.9 |
| GSMUA_Achr2P04810_001 | Banana | nucleus | 31.02 | 31.86 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 21.78 | 31.28 |
| GSMUA_Achr3P27500_001 | Banana | cytosol | 30.69 | 30.9 |
| HORVU1Hr1G054570.1 | Barley | nucleus | 27.39 | 30.63 |
| GSMUA_Achr10P... | Banana | nucleus | 29.04 | 30.14 |
| Zm00001d030004_P001 | Maize | mitochondrion, nucleus | 29.04 | 29.53 |
| TraesCS1A01G214000.1 | Wheat | mitochondrion, nucleus | 27.06 | 29.18 |
| TraesCS1B01G227800.1 | Wheat | nucleus | 27.06 | 29.18 |
| Os10t0567600-01 | Rice | plasma membrane | 28.05 | 29.11 |
| TraesCS1D01G216900.1 | Wheat | mitochondrion, nucleus | 27.06 | 28.57 |
| EER91903 | Sorghum | nucleus | 29.04 | 27.16 |
| HORVU7Hr1G082390.1 | Barley | nucleus | 24.75 | 22.06 |
Protein Annotations
| ArrayExpress:VIT_15s0021g00520 | EMBL:FN594952 | EnsemblPlants:VIT_15s0021g00520.t01 | EnsemblPlantsGene:VIT_15s0021g00520 | EntrezGene:100244411 | EntrezGene:LOC100244411 |
| PANTHER:PTHR35486 | ProteinID:CCB43943 | ProteinID:CCB43943.1 | RefSeq:XP_002266696 | RefSeq:XP_002266696.1 | SEG:seg |
| unigene:Vvi.23962 | UniParc:UPI0001984C1C | UniProt:F6GVG0 | wikigene:100244411 | wikigene:LOC100244411 | MapMan:35.2 |
Description
No Description!
Coordinates
chr15:+:10162195..10163422
Molecular Weight (calculated)
33537.4 Da
IEP (calculated)
10.831
GRAVY (calculated)
-0.754
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCKKHPTDL SSGVGVCASC LRERLFSLIA AQAEAQARAQ AQGRLAEDRR KSDTHPPPLV FPRSVSPYVC RRKSDDVACG HQLYDTVSQR RFYSTPQVGP
101: TYSNTGTVAS FDLFKKKPSK FAFVKSLFRS RSETSESDPR VSRGTTTSSS SSSWLGSIFS GWSKKQSRLC DETNAGGRRV CRMNRGMSPA RREDEEDDYD
201: LSPSASGYSS ESQAWRRTPT ATAPATRRAR PTLGRNVSGL AFCMSPLVRA SPNRQWNQKG MPPEIGLPGE IRVQTKPNLS TAAAFCANRS RKLADFGRFN
301: HNH
101: TYSNTGTVAS FDLFKKKPSK FAFVKSLFRS RSETSESDPR VSRGTTTSSS SSSWLGSIFS GWSKKQSRLC DETNAGGRRV CRMNRGMSPA RREDEEDDYD
201: LSPSASGYSS ESQAWRRTPT ATAPATRRAR PTLGRNVSGL AFCMSPLVRA SPNRQWNQKG MPPEIGLPGE IRVQTKPNLS TAAAFCANRS RKLADFGRFN
301: HNH
001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
Arabidopsis Description
At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.