Factsheet for VIT_03s0038g00350.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0238g00110.t01
VIT_00s0271g00080.t01
VIT_00s0274g00040.t01
VIT_00s0513g00020.t01
VIT_00s0918g00010.t01
VIT_00s1360g00010.t01
VIT_05s0029g01220.t01
VIT_06s0061g00780.t01
VIT_07s0129g00040.t01
VIT_07s0141g00610.t01
VIT_07s0151g01010.t01
VIT_08s0040g01560.t01
VIT_08s0056g00160.t01
VIT_09s0002g05240.t01
VIT_09s0002g08540.t01
VIT_11s0037g00390.t01
VIT_12s0057g00240.t01
VIT_13s0067g03220.t01
VIT_17s0000g08810.t01
VIT_19s0014g02890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39050.1	VIT_07s0151g01010.t01	AT1G03140.1	21798944
AT4G39050.1	VIT_09s0002g05240.t01	AT1G15570.1	21798944
AT4G39050.1	VIT_00s0271g00080.t01	AT1G55890.1	21798944
AT4G39050.1	VIT_00s0274g00040.t01	AT1G55890.1	21798944
AT4G39050.1	VIT_00s0918g00010.t01	AT2G17670.1	21798944
AT4G39050.1	VIT_00s1360g00010.t01	AT2G17670.1	21798944
AT4G39050.1	VIT_07s0141g00610.t01	AT2G30580.1	21798944
AT4G39050.1	VIT_08s0040g01560.t01	AT2G36990.1	21798944
AT4G39050.1	VIT_00s0238g00110.t01	AT3G15360.1	21798944
AT4G39050.1	VIT_19s0014g02890.t01	AT3G15360.1	21798944
AT4G39050.1	VIT_08s0056g00160.t01	AT3G60360.1	21798944
AT4G39050.1	VIT_17s0000g08810.t01	AT4G24680.1	21798944
AT4G39050.1	VIT_12s0057g00240.t01	AT4G28230.1	21798944
AT4G39050.1	VIT_13s0067g03220.t01	AT5G05190.1	21798944
AT4G39050.1	VIT_09s0002g08540.t01	AT5G11090.1	21798944
AT4G39050.1	VIT_06s0061g00780.t01	AT5G22890.1	21798944
AT4G39050.1	VIT_05s0029g01220.t01	AT5G49210.1	21798944
AT4G39050.1	VIT_11s0037g00390.t01	AT5G57910.1	21798944
AT4G39050.1	VIT_00s0513g00020.t01	AT5G67530.1	21798944
AT4G39050.1	VIT_07s0129g00040.t01	AT5G67530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51475	Soybean	plastid	78.56	80.84
KRH60786	Soybean	plastid	78.29	80.56
KRH29374	Soybean	plastid	74.84	76.65
Solyc10g054080.1.1	Tomato	plastid	73.93	76.43
Solyc11g044880.1.1	Tomato	plastid	73.93	76.29
AT4G39050.1	Thale cress	plastid	72.21	75.36
CDY12116	Canola	plastid	70.21	74.83
CDX72718	Canola	plastid	69.03	74.73
CDX90305	Canola	plastid	70.03	74.64
CDY22394	Canola	plastid	70.03	74.35
Bra010714.1-P	Field mustard	plastid	70.75	74.12
KRH24392	Soybean	plastid	73.3	74.1
AT2G21380.2	Thale cress	plastid	69.75	72.59
CDX82022	Canola	plastid	69.66	71.62
Bra031184.1-P	Field mustard	plastid	69.57	71.46
KXG38192	Sorghum	plastid	66.21	69.49
Os10t0512800-01	Rice	plastid	66.12	68.74
TraesCS1B01G202600.1	Wheat	plastid	64.85	68.59
TraesCS1A01G177600.1	Wheat	plastid	64.85	68.59
Solyc01g110190.2.1	Tomato	plastid	66.58	68.57
TraesCS1D01G176100.1	Wheat	plastid	64.76	68.49
PGSC0003DMT400008772	Potato	cytosol	29.61	68.06
Zm00001d032464_P008	Maize	plastid	65.03	66.73
GSMUA_Achr11P...	Banana	plastid	22.62	66.4
Zm00001d013859_P002	Maize	plastid	63.94	65.61
HORVU1Hr1G047110.10	Barley	plastid	61.94	65.26
Bra033597.1-P	Field mustard	cytosol	70.57	63.74
VIT_08s0007g06820.t01	Wine grape	plastid	44.6	49.2
VIT_18s0001g02380.t01	Wine grape	plastid	50.32	48.94
VIT_16s0050g02080.t01	Wine grape	cytosol, mitochondrion	5.36	25.88
VIT_18s0001g08700.t01	Wine grape	cytosol	18.62	24.4
VIT_11s0016g00460.t01	Wine grape	cytosol	18.07	21.1
VIT_17s0000g03290.t01	Wine grape	cytosol, plastid	17.71	20.27
VIT_08s0007g05340.t01	Wine grape	cytosol	22.07	19.44
VIT_18s0001g13580.t01	Wine grape	cytosol	17.08	19.34
VIT_04s0023g03060.t01	Wine grape	cytosol	16.8	19.01
VIT_03s0038g00700.t01	Wine grape	nucleus	16.71	18.99
VIT_08s0007g03090.t01	Wine grape	nucleus	17.17	18.73
VIT_06s0004g03810.t01	Wine grape	plastid	17.8	18.67
VIT_07s0031g00130.t01	Wine grape	cytosol	17.71	18.07
VIT_18s0001g10090.t01	Wine grape	cytosol	17.53	17.92
VIT_08s0040g02590.t01	Wine grape	plastid	16.71	17.54
VIT_05s0029g00400.t01	Wine grape	cytosol, plastid	18.98	15.6
VIT_19s0090g01600.t01	Wine grape	cytosol, plastid	16.62	15.29
VIT_18s0001g07550.t01	Wine grape	cytosol	15.44	14.24
VIT_06s0009g00820.t01	Wine grape	cytosol	18.53	14.02
VIT_05s0020g00620.t01	Wine grape	cytosol	17.71	10.03
VIT_03s0063g01120.t01	Wine grape	cytosol	21.8	8.94

Protein Annotations

EntrezGene:100253714	wikigene:100253714	MapMan:20.1.3.6	Gene3D:3.30.40.10	Gene3D:3.40.850.10	EMBL:AM437988
ProteinID:CAN80502	ProteinID:CAN80502.1	ProteinID:CCB60715	ProteinID:CCB60715.1	ncoils:Coil	UniProt:F6I199
EMBL:FN596508	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005871	GO:GO:0007018	GO:GO:0008017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	GO:GO:0042803	GO:GO:0043531	InterPro:IPR001752
InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR036961	InterPro:Kinesin-like_fam	InterPro:Kinesin_motor_CS	InterPro:Kinesin_motor_dom
InterPro:Kinesin_motor_dom_sf	EntrezGene:LOC100253714	wikigene:LOC100253714	InterPro:P-loop_NTPase	PFAM:PF00225	PFAM:PF13920
PRINTS:PR00380	ScanProsite:PS00411	PFscan:PS50067	PFscan:PS50089	PANTHER:PTHR24115	PANTHER:PTHR24115:SF497
SMART:SM00129	SUPFAM:SSF52540	SUPFAM:SSF57850	UniParc:UPI000210A7F0	ArrayExpress:VIT_03s0038g00350	EnsemblPlantsGene:VIT_03s0038g00350
EnsemblPlants:VIT_03s0038g00350.t01	RefSeq:XP_002265593	RefSeq:XP_002265593.1	RefSeq:XP_010647680.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:341673..357567

Molecular Weight (calculated)

122012.0 Da

IEP (calculated)

5.862

GRAVY (calculated)

-0.564

Length

1101 amino acids

Sequence
(BLAST)

0001: MAASSSRGRS SSPFHYRKPS SPYSSSSSSS SFMNGKLMPR SCSSSASSFL NNSGNGLGSR SITPSRGRVD SMYAGPRGYG SRTPVAFASD ELIGELIDVP
0101: RSGDSISVTI RFRPLSEREF QRGDEIAWFA DGDKIVRNEY NPATAYAFDR VFGPSTGSQD VYDVAARPVV KAAMEGINGT VFAYGVTSSG KTHTMHGDQN
0201: SPGIIPLAIK DVFSIIQDTP GREFLLRVSY LEIYNEVIND LLDPTGQNLR VREDAQGTYV EGIKEEVVLS PGHALSFIAA GEEHRHVGSN NFNLLSSRSH
0301: TIFTLMIESS NHGDEYDGVI FSQLNLIDLA GSESSKTETT GLRRKEGSYI NKSLLTLGTV IGKLSEGRAS HVPYRDSKLT RLLQSSLSGH GHVSLICTVT
0401: PASSNMEETH NTLKFASRAK RVEIYASRNK IIDEKSLIKK YQREISTLKE ELDQLRRGML VGVSHEEIIS LRQQLEEGQV KMQSRLEEEE EAKAALMSRI
0501: QRLTKLILVS TKNTLPGCLG DAVSHQRSHS VGEDDKLDVI REGPLPAENE NQKDSPSSAL AIPSDLTCDF RHRRSSSKWN EELSPASSTV TESTQAGELI
0601: SGSACGSKLP TGGMTMSDQM DLLVEQVKML AGEIAFSTST LKRLMEQSVN DPDGSKTQIQ NLEHELQEKK RQMRILEQRM METGEASFAN ASMVDMQQTV
0701: MKLMTQCSEK GFELEIKTAD NRVLQEQLQN KCAENMELQQ KVDLLQQQLS SGTVQKLSLS SEQGVSEDYI DELKKKVQSQ EIENEKLKLE QVQILEENSG
0801: LRVQNQKLSE EASYAKELAS AAAVELKNLA GEVTKISLQN TKLEKELIAA RELAHSRGSN LQASNNGNRK YSDSAKPGRK GRLPGRANDI SGAVYDDFEL
0901: WNLDPDDLKM ELQARKQREM ALEAALADKE LVEDDYRKKL EEAKKRESAL ENDLANMWVL VAQLKKEGGA IPESNTDERH PNELDHVNDL NPKIDDSDSK
1001: NTVLKEMQVP DVMRPAHDIP KEEPLVARLK ARMQEMKEKE QKYLGNGDAN SHICKVCFES PTAAILLPCR HFCLCRSCSL ACSECPICRT KIADRFFAFT
1101: S

Best Arabidopsis Sequence Match ( AT4G39050.1 )
(BLAST)

0001: MASSSSRTRS SRPPSPASST SSSHLSNRLI PRSNSTSASS LITSAAGIAS RSMTPSRTFS DSGLIGSGSF GIGSPVPYPS EELLGDPMDD TISSERDSIS
0101: VTVRFRPLSD REYQRGDEVA WYPDGDTLVR HEYNPLTAYA FDKVFGPQAT TIDVYDVAAR PVVKAAMEGV NGTVFAYGVT SSGKTHTMHG DQESPGIIPL
0201: AIKDVFSIIQ DTPGREFLLR VSYLEIYNEV INDLLDPTGQ NLRVREDSQG TYVEGIKEEV VLSPGHALSF IAAGEEHRHV GSNNFNLLSS RSHTIFTLMV
0301: ESSATGDEYD GVIFSQLNLI DLAGSESSKT ETTGLRRKEG SYINKSLLTL GTVIGKLSEG KATHIPYRDS KLTRLLQSSL SGHGHVSLIC TITPASSSSE
0401: ETHNTLKFAS RAKSIEIYAS RNQIIDEKSL IKKYQREIST LKLELDQLRR GMLVGVSHEE LMSLKQQLEE GQVKMQSRLE EEEEAKAALM SRIQKLTKLI
0501: LVSTKNSIPG YSGDIPTHQR SLSAGKDDKF DSLLLESDNL GSPSSTLALL SEGSLGFNHR RSSSKLNDEN SPGAEFTQGV MTPDEIDLLV EQVKMLAGEI
0601: AFSTSTLKRL VDQSVNDPEN SQTQIQNLER EIHEKQRQMR GLEQLIIESG EASIANASLV EMQQKVMSLM TQCNEKSFEL EIKSADNCIL QEQLQEKCTE
0701: NKELHEKVNL LEQRLNAVSS EKSSPSCSNK AVSGEYADEL KKKIQSQEIE NEELKLEHVQ IVEENSGLRV QNQKLAEEAS YAKELASAAA VELKNLASEV
0801: TKLSLQNTKL EKELAAARDL AQTRNPMNGV NRKYNDGARS GRKGRISSSR SSGDEFDAWN LDPEDLKMEL QVRKQREVAL ESALAEKEFI EDEYRKKAEE
0901: AKRREEALEN DLANMWVLVA KLKKDNGALP EPNGTDPGRE LEKSQSHAVL KERQVSSAPR QPEVVVVAKT EETPKEEPLV ARLKARMQEM KEKEMKSQAN
1001: GDANSHICKV CFESPTAAIL LPCRHFCLCK SCSLACSECP ICRTKISDRL FAFPS

Arabidopsis Description

KIN7DKinesin-like protein KIN-7D, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W5R5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.