Factsheet for VIT_05s0029g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0194g00260.t01
VIT_03s0017g00210.t01
VIT_04s0008g01350.t01
VIT_04s0008g05470.t01
VIT_08s0007g02790.t01
VIT_16s0013g00240.t01
VIT_16s0115g00130.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49210.1	VIT_04s0008g05470.t01	AT2G25490.1	21798944
AT5G49210.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT5G49210.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT5G49210.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT5G49210.1	VIT_08s0007g02790.t01	AT3G11590.1	21798944
AT5G49210.1	VIT_00s0194g00260.t01	AT4G17220.1	21798944
AT5G49210.1	VIT_04s0008g01350.t01	AT5G11980.1	21798944
AT5G49210.1	VIT_16s0013g00240.t01	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01771	Soybean	mitochondrion	47.96	53.71
KRH46915	Soybean	mitochondrion	47.96	52.81
Solyc05g053730.2.1	Tomato	nucleus	53.06	52.0
PGSC0003DMT400040750	Potato	mitochondrion	52.04	51.0
Os11t0148600-01	Rice	mitochondrion	45.92	48.39
OQU82869	Sorghum	mitochondrion	44.9	48.35
Zm00001d004927_P001	Maize	mitochondrion	45.41	47.85
TraesCS4A01G184600.1	Wheat	mitochondrion	46.43	47.64
TraesCS4B01G134100.1	Wheat	mitochondrion	46.43	47.64
TraesCS4D01G129000.1	Wheat	mitochondrion	46.43	47.64
AT5G49210.1	Thale cress	mitochondrion	46.94	47.18
CDY56435	Canola	mitochondrion	46.43	47.15
CDX86248	Canola	mitochondrion	46.43	47.15
Bra037430.1-P	Field mustard	mitochondrion	45.92	46.63
CDY33924	Canola	mitochondrion, nucleus	45.92	45.69
Bra020657.1-P	Field mustard	mitochondrion, nucleus	45.92	45.69
GSMUA_Achr1P11210_001	Banana	mitochondrion	47.96	44.13
Os12t0146400-01	Rice	mitochondrion	22.96	42.45
CDY70877	Canola	mitochondrion	47.96	41.59
HORVU4Hr1G025670.1	Barley	mitochondrion	45.41	41.2
KXG38100	Sorghum	plastid	28.57	24.45

Protein Annotations

ArrayExpress:VIT_05s0029g01220	EMBL:AM459795	EMBL:FN594958	EnsemblPlants:VIT_05s0029g01220.t01	EnsemblPlantsGene:VIT_05s0029g01220	EntrezGene:100246892
EntrezGene:LOC100246892	ncoils:Coil	PANTHER:PTHR36402	ProteinID:CAN74582	ProteinID:CAN74582.1	ProteinID:CCB44274
ProteinID:CCB44274.1	RefSeq:XP_002270599	RefSeq:XP_002270599.1	SEG:seg	TIGR:TC56002	unigene:Vvi.38
UniParc:UPI0001520F0B	UniProt:A5BHM0	wikigene:100246892	wikigene:LOC100246892	MapMan:35.2	:

Description

No Description!

Coordinates

chr5:-:17105424..17126793

Molecular Weight (calculated)

22979.3 Da

IEP (calculated)

10.356

GRAVY (calculated)

-1.026

Length

196 amino acids

Sequence
(BLAST)

001: MAVAASRNTL QRYSAEILKP TLTQTLSLRF NSTSTHSTHQ DHTYTDPNSF IGSWTAPADP KVAQAKLTGL RRDYAKKVKE LRLQYIHEVE LQREDKRRKD
101: EAKREAARRA QAEIKASKAA AAQARAAERK VFEEEFRQTL LKERTEKLEN WRMKENMMDE KRKEKNELLR RQSSIWIDER DLEKKILEAI VDTTHL

Best Arabidopsis Sequence Match ( AT5G49210.1 )
(BLAST)

001: MAFCNKLSRF VRRQSENASM IGSLRSFSAD ATHHRFHQET HNFLEPEYYI GSWEAPSDPK DAERKLAQLR RDYAKKVRVY RKEYIHEIEM LRVEKQRKDE
101: ARLLAERAAN EERRLLKAEA AKVRAEERKI ADEEFRQTLI KERAEKLEMW KMMGQKREEK IKEREKLLRE QSSLWIEQKE LERKITEALV DNVVL

Arabidopsis Description

AT5g49210/K21P3_8 [Source:UniProtKB/TrEMBL;Acc:Q945P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.