Factsheet for VIT_04s0008g05470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01380.t01
VIT_14s0108g00080.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	VIT_06s0009g01380.t01	AT2G27050.1	14675533
AT2G25490.1	VIT_06s0009g01380.t01	AT3G20770.1	14675532
AT2G25490.1	VIT_06s0009g01380.t01	AT3G20770.1	14675533
AT2G25490.1	VIT_14s0108g00080.t01	AT3G28715.1	21798944
AT2G25490.1	VIT_18s0001g14860.t01	AT5G42190.1	14675533
AT2G25490.1	VIT_18s0001g14860.t01	AT5G42190.1	14749489
AT2G25490.1	VIT_18s0001g14860.t01	AT5G42190.1	21798944
AT5G25350.1	VIT_06s0009g01380.t01	AT3G20770.1	14675532
AT5G25350.1	VIT_06s0009g01380.t01	AT3G20770.1	14675533
AT5G25350.1	VIT_18s0001g14860.t01	AT5G42190.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15886	Soybean	cytosol	67.17	69.57
KRH05167	Soybean	cytosol	62.07	67.87
VIT_11s0016g05410.t01	Wine grape	cytosol	66.87	67.27
KRH52439	Soybean	cytosol, nucleus, peroxisome	62.22	65.05
KRH61771	Soybean	cytosol	61.77	64.78
Solyc08g060810.2.1	Tomato	plastid	63.87	64.06
PGSC0003DMT400040977	Potato	nucleus	64.17	63.98
AT2G25490.1	Thale cress	plastid	58.77	62.42
CDY35358	Canola	cytosol	55.47	59.39
Bra034254.1-P	Field mustard	cytosol	55.32	59.32
CDX88173	Canola	cytosol	55.17	59.16
CDX80503	Canola	cytosol	54.87	58.94
CDX76980	Canola	cytosol	52.92	58.93
Bra009835.1-P	Field mustard	cytosol	54.72	58.68
AT5G25350.1	Thale cress	cytosol	54.42	58.27
CDX87090	Canola	cytosol	53.67	58.12
Bra036542.1-P	Field mustard	cytosol	53.22	57.63
CDY19807	Canola	cytosol	52.92	57.31
GSMUA_Achr4P30680_001	Banana	cytosol	53.37	54.6
GSMUA_Achr6P05220_001	Banana	cytosol	52.92	53.98
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	52.92	53.98
PGSC0003DMT400089433	Potato	mitochondrion	36.28	52.72
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	52.32	52.25
PGSC0003DMT400094835	Potato	cytosol	19.19	52.24
PGSC0003DMT400042949	Potato	cytosol	42.58	51.45
Solyc06g049010.1.1	Tomato	plastid	47.38	50.97
HORVU7Hr1G090240.1	Barley	cytosol	40.93	50.65
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	50.52	50.45
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	19.94	50.0
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	48.73	49.62
Zm00001d053642_P001	Maize	cytosol	48.43	49.62
Zm00001d015778_P001	Maize	cytosol	47.83	49.61
TraesCS6D01G169200.1	Wheat	cytosol	47.83	49.15
TraesCS6B01G210700.1	Wheat	cytosol	47.53	48.84
TraesCS6A01G181900.1	Wheat	cytosol	47.38	48.69
HORVU6Hr1G038430.3	Barley	plastid	47.53	48.55
Os02t0200900-01	Rice	cytosol	47.83	48.33
EER90022	Sorghum	cytosol, plastid	45.28	48.24
TraesCS7A01G377500.1	Wheat	cytosol	46.63	47.92
TraesCS7B01G278800.1	Wheat	cytosol	46.48	47.91
TraesCS7D01G373800.1	Wheat	cytosol	46.18	47.31
Solyc06g030610.1.1	Tomato	cytosol	19.34	47.08
Os06t0605900-01	Rice	cytosol	43.48	46.25
Solyc06g030620.1.1	Tomato	cytosol	13.34	44.28
HORVU5Hr1G000950.4	Barley	plastid	27.59	41.16
HORVU5Hr1G029670.1	Barley	mitochondrion	31.63	41.13
Zm00001d036880_P003	Maize	cytosol	44.83	40.62
Zm00001d000408_P001	Maize	cytosol	44.53	39.97
VIT_05s0020g02400.t01	Wine grape	cytosol	23.99	26.19
VIT_10s0071g00310.t01	Wine grape	cytosol	16.04	25.91
VIT_18s0001g09940.t01	Wine grape	plastid	19.64	24.21
VIT_08s0007g07030.t01	Wine grape	cytosol	12.59	24.0
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	22.04	22.86
VIT_08s0058g00700.t01	Wine grape	cytosol	22.64	22.78
VIT_18s0001g15010.t01	Wine grape	mitochondrion	14.54	22.66
VIT_07s0129g01110.t01	Wine grape	plastid	18.74	22.2
VIT_06s0004g07520.t01	Wine grape	cytosol	20.84	21.0
VIT_18s0072g00820.t01	Wine grape	cytosol, extracellular, peroxisome	14.99	18.59

Protein Annotations

EntrezGene:100249270	wikigene:100249270	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	EMBL:AM444229
ProteinID:CAN82790	ProteinID:CAN82790.1	ProteinID:CCB46805	ProteinID:CCB46805.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
UniProt:F6H327	EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	EntrezGene:LOC100249270	wikigene:LOC100249270	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	TIGR:TC53577	UniParc:UPI00019830DB	ArrayExpress:VIT_04s0008g05470	EnsemblPlantsGene:VIT_04s0008g05470
EnsemblPlants:VIT_04s0008g05470.t01	unigene:Vvi.11431	RefSeq:XP_002285126	RefSeq:XP_002285126.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:4918804..4922981

Molecular Weight (calculated)

71008.4 Da

IEP (calculated)

7.599

GRAVY (calculated)

0.154

Length

667 amino acids

Sequence
(BLAST)

001: MSKLFDYTGN DAFCPGGSIY SNIKDSSLFL SLGRHVDVYF PPRKRSRISA PFVVSGDKFE QKEQVSIDVL PDECLFEILR RLPEGQEKSA CACVSKRWLM
101: LLSSIQRDEI CSNKTTGFLK PKETLISRNT DESSEAKKKG GDEVTPEAVD LEIESDGYLS RCLEGKKATD VRLAAIAVGT GGHGGLGKLL IRGSNSSCRV
201: TNLGLGAIAR GCPSLRVLSL WNVSSIADEG LIEIANGCHQ LEKLDLCGCP TISDKALVAI AKNCHNLTAL TIESCPRIGN AGLQAVGQFC PNLKSISIKN
301: CPLVGDQGVA SLLSSASYAL TKVKLHALNI TDVSLAVIGH YGKAITDLDL TGLQNVGERG FWVMGSGHGL QKLKSLTVTS CQGVTDMGLE AVGKGCPNLK
401: QFCLRKCAFL SDNGLVSLAK VAASLESLQL EECHHITQYG VFGALVSCGG KLKSLALVNC FGIKDTVEGL PLMTPCKSLS SLSIRNCPGF GNASLCMVGK
501: LCPQLQRLDL SGALRITNAG FLPLLESCEA SLIKVNLSGC MNLTDNVVSA LAKVHGGTLE QLNLDGCQKI TDASMFAIAE NCALLSDLDV SKTAITDYGV
601: AALASAKHLN VQILSLSGCS LISNQSVPFL RKLGQTLLGL NLQQCNTISS SMVNMLVEQL WRCDILF

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.