Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G373800.1 | Wheat | cytosol | 98.92 | 98.31 |
| TraesCS7A01G377500.1 | Wheat | cytosol | 97.99 | 97.69 |
| HORVU7Hr1G090240.1 | Barley | cytosol | 80.37 | 96.47 |
| HORVU1Hr1G089690.1 | Barley | cytosol, extracellular, mitochondrion | 36.32 | 88.35 |
| Os06t0605900-01 | Rice | cytosol | 78.83 | 81.34 |
| EER90022 | Sorghum | cytosol, plastid | 76.2 | 78.75 |
| HORVU5Hr1G029670.1 | Barley | mitochondrion | 61.36 | 77.39 |
| HORVU5Hr1G000950.4 | Barley | plastid | 52.24 | 75.62 |
| TraesCS6B01G210700.1 | Wheat | cytosol | 70.48 | 70.26 |
| Zm00001d000408_P001 | Maize | cytosol | 74.81 | 65.14 |
| Zm00001d036880_P003 | Maize | cytosol | 73.88 | 64.95 |
| GSMUA_Achr6P05220_001 | Banana | cytosol | 52.86 | 52.29 |
| GSMUA_Achr4P30680_001 | Banana | cytosol | 51.62 | 51.23 |
| GSMUA_Achr9P28510_001 | Banana | cytosol, nucleus, peroxisome | 51.0 | 50.46 |
| PGSC0003DMT400007545 | Potato | cytosol | 49.15 | 49.92 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 51.47 | 49.85 |
| KRH03688 | Soybean | cytosol | 48.53 | 49.14 |
| Solyc12g009560.1.1 | Tomato | cytosol | 48.07 | 48.82 |
| KRH20255 | Soybean | cytosol | 47.76 | 48.36 |
| PGSC0003DMT400079445 | Potato | cytosol, nucleus, peroxisome | 47.6 | 47.98 |
| VIT_11s0016g05410.t01 | Wine grape | cytosol | 49.15 | 47.96 |
| Solyc07g008250.2.1 | Tomato | cytosol, nucleus, peroxisome | 46.99 | 47.43 |
| GSMUA_Achr2P15920_001 | Banana | cytosol, peroxisome, plastid | 48.69 | 47.16 |
| KRH62989 | Soybean | cytosol | 47.14 | 46.92 |
| KRH15886 | Soybean | cytosol | 46.68 | 46.89 |
| VIT_04s0008g05470.t01 | Wine grape | cytosol | 47.91 | 46.48 |
| KRH05167 | Soybean | cytosol | 43.59 | 46.23 |
| Solyc08g060810.2.1 | Tomato | plastid | 47.14 | 45.86 |
| AT2G25490.1 | Thale cress | plastid | 44.51 | 45.86 |
| Bra036542.1-P | Field mustard | cytosol | 43.59 | 45.78 |
| PGSC0003DMT400040977 | Potato | nucleus | 47.14 | 45.59 |
| CDX87090 | Canola | cytosol | 43.28 | 45.45 |
| KRH04870 | Soybean | cytosol | 19.01 | 45.22 |
| KRH52439 | Soybean | cytosol, nucleus, peroxisome | 44.51 | 45.14 |
| CDY19807 | Canola | cytosol | 42.97 | 45.13 |
| CDY35358 | Canola | cytosol | 43.28 | 44.94 |
| Bra034254.1-P | Field mustard | cytosol | 43.12 | 44.86 |
| KRH61771 | Soybean | cytosol | 43.89 | 44.65 |
| AT5G25350.1 | Thale cress | cytosol | 42.97 | 44.62 |
| CDX76980 | Canola | cytosol | 41.27 | 44.57 |
| CDX88173 | Canola | cytosol | 42.81 | 44.53 |
| Bra009835.1-P | Field mustard | cytosol | 42.5 | 44.21 |
| CDX80503 | Canola | cytosol | 42.35 | 44.12 |
| PGSC0003DMT400094835 | Potato | cytosol | 15.92 | 42.04 |
| PGSC0003DMT400042949 | Potato | cytosol | 34.93 | 40.94 |
| PGSC0003DMT400089433 | Potato | mitochondrion | 28.28 | 39.87 |
| Solyc06g030620.1.1 | Tomato | cytosol | 12.06 | 38.81 |
| Solyc06g049010.1.1 | Tomato | plastid | 36.94 | 38.55 |
| Solyc06g030610.1.1 | Tomato | cytosol | 15.3 | 36.13 |
| TraesCS3B01G080300.1 | Wheat | cytosol | 12.83 | 23.65 |
| TraesCS6B01G262900.1 | Wheat | cytosol | 15.15 | 23.5 |
| TraesCS5B01G097800.2 | Wheat | cytosol | 23.18 | 22.69 |
| TraesCS1B01G275600.1 | Wheat | cytosol | 12.21 | 20.84 |
| TraesCS3B01G440600.2 | Wheat | cytosol | 12.06 | 20.47 |
| TraesCS5B01G158800.1 | Wheat | plastid | 15.77 | 19.35 |
| TraesCS5B01G149400.1 | Wheat | mitochondrion | 20.25 | 19.21 |
| TraesCS4B01G085300.2 | Wheat | plastid | 11.9 | 19.01 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G278800.1 | EnsemblPlantsGene:TraesCS7B01G278800 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR44327 |
| PANTHER:PTHR44327:SF3 | PFAM:PF13516 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 | MapMan:11.5.2.6 |
| MapMan:19.2.2.8.1.4.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:511062371..511064432
Molecular Weight (calculated)
68066.0 Da
IEP (calculated)
7.134
GRAVY (calculated)
0.290
Length
647 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPFHDCRDG GLLVLDPAAA MFGGVRQRKR ARVTAVPPCV FAAAAEEALR AVPAAKRQRL REAPTLDALP DGCLFEILRR VQGARARGAS SCVSRRWLAL
101: LGGIRASEIK RVQAPAVPDL NQVFVCEDED EAEAARLGRS ERTLEGEGAT DVALTAAAVA DGLRGSLESV VVRGSHPTRG VTDSGLSAVA RGCPSLRSLA
201: LWDVPQVTDA GLAEIAAGCP SLEKLDITGC PLVTDKGLVA VAQGCPDLKT LTIEACSGVA NEGLKAIGRC CSKLQAVNIK NCAYVGDQGV SGLICSATAS
301: LAKVCLQGLS ITDASLAVIG YYGKAITNLT LTRLSAVGER GFWVMANALG LQKLRCMSIT SCPGVTELAL VSIAKFCPSL KQLYLRKCSQ ISDGLLKDFA
401: EAAKVLENLQ IEECNRITLM GILSFLLNCS PKFKTLSLVK CTGIKDICSA PAQLPVCKSL RSLTIKQCPG FTDASLAVVG MICPHLENLD LSGLGAVTDD
501: GLLPLIRSSE SGLVHVDLNG CENLTDAAIS ALVKAHGTFL AHLSLEGCSK ITDASLFAIS ESCSELAELD LSNCMVSDYG VAVLASAERL KLRVLSLSGC
601: LKVTPKSVPF LGSMPASLEG LNLQFNFIGN HNIASLEKQL WWCDILA
101: LGGIRASEIK RVQAPAVPDL NQVFVCEDED EAEAARLGRS ERTLEGEGAT DVALTAAAVA DGLRGSLESV VVRGSHPTRG VTDSGLSAVA RGCPSLRSLA
201: LWDVPQVTDA GLAEIAAGCP SLEKLDITGC PLVTDKGLVA VAQGCPDLKT LTIEACSGVA NEGLKAIGRC CSKLQAVNIK NCAYVGDQGV SGLICSATAS
301: LAKVCLQGLS ITDASLAVIG YYGKAITNLT LTRLSAVGER GFWVMANALG LQKLRCMSIT SCPGVTELAL VSIAKFCPSL KQLYLRKCSQ ISDGLLKDFA
401: EAAKVLENLQ IEECNRITLM GILSFLLNCS PKFKTLSLVK CTGIKDICSA PAQLPVCKSL RSLTIKQCPG FTDASLAVVG MICPHLENLD LSGLGAVTDD
501: GLLPLIRSSE SGLVHVDLNG CENLTDAAIS ALVKAHGTFL AHLSLEGCSK ITDASLFAIS ESCSELAELD LSNCMVSDYG VAVLASAERL KLRVLSLSGC
601: LKVTPKSVPF LGSMPASLEG LNLQFNFIGN HNIASLEKQL WWCDILA
001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS
Arabidopsis Description
EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.