Factsheet for TraesCS3B01G241000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G160800.1
TraesCS1B01G177500.1
TraesCS4B01G387000.1
TraesCS5A01G092400.1
TraesCS5A01G551300.1
TraesCS5B01G098300.2
TraesCS5D01G104600.2
TraesCS6A01G412800.1
TraesCS6B01G462100.1
TraesCS6D01G397000.1
TraesCS7A01G560400.1
TraesCS7B01G486800.1
TraesCS7D01G549400.1
TraesCSU01G126200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28715.1	TraesCS6A01G412800.1	AT5G08330.1	21798944
AT3G28715.1	TraesCS6B01G462100.1	AT5G08330.1	21798944
AT3G28715.1	TraesCS6D01G397000.1	AT5G08330.1	21798944
AT3G28715.1	TraesCS1A01G160800.1	AT5G23130.1	21798944
AT3G28715.1	TraesCS1B01G177500.1	AT5G23130.1	21798944
AT3G28715.1	TraesCS4B01G387000.1	AT5G23130.1	21798944
AT3G28715.1	TraesCS5A01G551300.1	AT5G23130.1	21798944
AT3G28715.1	TraesCS7A01G560400.1	AT5G23130.1	21798944
AT3G28715.1	TraesCS7B01G486800.1	AT5G23130.1	21798944
AT3G28715.1	TraesCS7D01G549400.1	AT5G23130.1	21798944
AT3G28715.1	TraesCSU01G126200.1	AT5G23130.1	21798944
AT3G28715.1	TraesCS5A01G092400.1	AT5G63310.1	21798944
AT3G28715.1	TraesCS5B01G098300.2	AT5G63310.1	21798944
AT3G28715.1	TraesCS5D01G104600.2	AT5G63310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G213200.1	Wheat	cytosol	99.43	99.43
TraesCS3A01G210400.2	Wheat	cytosol, golgi	99.43	99.43
HORVU3Hr1G050990.2	Barley	vacuole	98.58	98.58
EES03178	Sorghum	cytosol	96.01	96.01
Os01t0587000-01	Rice	plasma membrane	95.73	95.73
GSMUA_Achr1P11740_001	Banana	cytosol	81.2	93.44
GSMUA_Achr6P35890_001	Banana	cytosol	80.63	92.79
KRH01133	Soybean	cytosol	92.02	92.02
KRH40128	Soybean	endoplasmic reticulum	92.02	92.02
VIT_14s0108g00080.t01	Wine grape	cytosol, extracellular	91.17	91.17
PGSC0003DMT400072522	Potato	cytosol, mitochondrion	90.88	90.88
Solyc10g081530.1.1	Tomato	nucleus, plastid	90.88	90.88
AT3G28710.1	Thale cress	cytosol	88.6	88.6
AT3G28715.1	Thale cress	cytosol	88.32	88.32
CDX95344	Canola	cytosol	20.23	77.17
Zm00001d011238_P001	Maize	cytosol	46.72	63.81
CDY17733	Canola	mitochondrion	12.25	31.62

Protein Annotations

Gene3D:1.10.132.50	Gene3D:1.20.1690.10	MapMan:24.1.1.1.3	InterPro:ATPase_V0-cplx_csu/dsu	InterPro:ATPase_V0-cplx_dsu	InterPro:ATPase_su_C-like
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015078
GO:GO:0015991	GO:GO:0016020	GO:GO:0033179	InterPro:IPR035067	PFAM:PF01992	PIRSF:PIRSF018497
PANTHER:PTHR11028	PANTHER:PTHR11028:SF0	SUPFAM:SSF103486	EnsemblPlantsGene:TraesCS3B01G241000	EnsemblPlants:TraesCS3B01G241000.1	InterPro:V-type_ATPase_suC

Description

No Description!

Coordinates

chr3B:+:380503367..380507783

Molecular Weight (calculated)

40751.8 Da

IEP (calculated)

4.638

GRAVY (calculated)

-0.205

Length

351 amino acids

Sequence
(BLAST)

001: MYSWEMLSFN IHDGFLEAIV RGNRSGLLTQ ADYNNLCQCE TLDDIKMHLS ATEYGPYLQN EPSPLHTTTI VEKCTLKLVD EYKHMLCQAN EPLSTFLQYI
101: TYGHMIDNVV LIVTGTLHER DVNELLEKCH PLGMFDSIAS LAVAQNMREL YRLVLVDTPL APYFSECITS EDLDDMNIEI MRNTLYKAYL EDFYKFCAKL
201: GGATAEIMCN LLSFEADRRA VNITINSIGT ELTRDDRRKL YSNFGLLFPY GHEELAVCED VDQVRGVMEK YPPYQSIFAK ISYGESQMLD KAFYEEEVKR
301: LCQSFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK NRVHDSVVPI F

Best Arabidopsis Sequence Match ( AT3G28715.1 )
(BLAST)

001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGPYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYNFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F

Arabidopsis Description

VHA-D2V-type proton ATPase subunit d2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.