Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G549400.1 | Wheat | nucleus | 87.39 | 88.72 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 84.08 | 85.63 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 84.38 | 73.37 |
| Os06t0729900-00 | Rice | nucleus | 59.76 | 60.67 |
| EER89011 | Sorghum | nucleus | 57.96 | 56.76 |
| Zm00001d036338_P001 | Maize | nucleus | 46.85 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 35.14 | 32.96 |
| PGSC0003DMT400027432 | Potato | cytosol | 31.83 | 31.93 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 31.23 | 31.8 |
| GSMUA_Achr11P... | Banana | nucleus | 33.63 | 30.94 |
| Solyc02g014090.2.1 | Tomato | nucleus | 32.73 | 30.36 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 33.03 | 29.97 |
| KRH38892 | Soybean | cytosol | 31.23 | 29.8 |
| CDY20605 | Canola | nucleus | 25.83 | 29.55 |
| KRH09395 | Soybean | nucleus | 31.23 | 29.38 |
| CDX81087 | Canola | nucleus | 32.73 | 28.91 |
| CDX78327 | Canola | nucleus | 32.43 | 28.8 |
| PGSC0003DMT400050883 | Potato | nucleus | 29.43 | 28.74 |
| Solyc11g039960.1.1 | Tomato | nucleus | 29.13 | 28.36 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 30.33 | 28.13 |
| CDY02209 | Canola | cytosol | 33.03 | 28.13 |
| Bra013019.1-P | Field mustard | cytosol | 32.73 | 27.95 |
| Bra005977.1-P | Field mustard | nucleus | 33.63 | 27.86 |
| CDY40759 | Canola | nucleus | 31.23 | 27.66 |
| Bra028667.1-P | Field mustard | nucleus | 30.93 | 27.39 |
| KRH40869 | Soybean | nucleus | 29.13 | 27.17 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 28.53 | 26.99 |
| AT5G23130.1 | Thale cress | nucleus | 32.13 | 26.95 |
| CDY21521 | Canola | nucleus | 33.63 | 26.79 |
| Bra009329.1-P | Field mustard | nucleus | 33.33 | 26.55 |
| KRG89129 | Soybean | nucleus | 28.23 | 26.55 |
| Bra008537.1-P | Field mustard | nucleus | 19.52 | 26.53 |
| CDX69966 | Canola | nucleus | 33.33 | 26.43 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 31.53 | 26.38 |
| CDY61916 | Canola | cytosol | 31.83 | 26.3 |
| AT5G08200.1 | Thale cress | nucleus | 31.83 | 25.92 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 17.72 | 25.65 |
| KRH29144 | Soybean | nucleus | 19.82 | 25.19 |
| CDY44762 | Canola | nucleus | 31.23 | 24.24 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G486800.1 | EnsemblPlantsGene:TraesCS7B01G486800 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF12 | PFAM:PF01476 | PFscan:PS51782 | SEG:seg |
| SMART:SM00257 | SUPFAM:SSF54106 | TIGR:cd00118 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7B:+:742589095..742591695
Molecular Weight (calculated)
35594.7 Da
IEP (calculated)
9.341
GRAVY (calculated)
-0.596
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MGISHPLSDE FYGGPRGGGL GLGSALLLSP DRTPPPPPAS CCSPVDGGQE DFLQHEVSRM DTLAGIAIKY GVQISDIKRA NSLMTDSQMY AHKALLIPLT
101: GRPMPSSVKR NGSSLRLKRA WAPNNQQNRD IVDSLDSVNS RLQQSSLAMS SLQSYYGLSS QRGDDMDLST EMSLYSKGSS QVTGSEILPI SSSPPDSTQS
201: TGRSNGAAKE KQDGSIRRRQ KVEADTNDDL LSDSIKMIKS FLPRPVSSMR LSTDSSSPDS AARSNGGSFL DGFKSAVRRS PSAPSFADSE NGGAGGSMWS
301: SSKWTFNHES FTRPLLDGLP KPSPGRRMKA ALD
101: GRPMPSSVKR NGSSLRLKRA WAPNNQQNRD IVDSLDSVNS RLQQSSLAMS SLQSYYGLSS QRGDDMDLST EMSLYSKGSS QVTGSEILPI SSSPPDSTQS
201: TGRSNGAAKE KQDGSIRRRQ KVEADTNDDL LSDSIKMIKS FLPRPVSSMR LSTDSSSPDS AARSNGGSFL DGFKSAVRRS PSAPSFADSE NGGAGGSMWS
301: SSKWTFNHES FTRPLLDGLP KPSPGRRMKA ALD
001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
Arabidopsis Description
F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.