Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89011 | Sorghum | nucleus | 62.8 | 60.59 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 60.67 | 59.76 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 59.76 | 59.76 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 58.54 | 58.72 |
| Zm00001d036338_P001 | Maize | nucleus | 50.91 | 53.53 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 60.67 | 51.96 |
| GSMUA_Achr11P... | Banana | nucleus | 39.94 | 36.9 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 33.23 | 33.33 |
| GSMUA_Achr11P... | Banana | nucleus | 36.59 | 33.15 |
| PGSC0003DMT400027432 | Potato | cytosol | 33.23 | 32.83 |
| PGSC0003DMT400050883 | Potato | nucleus | 32.32 | 31.09 |
| Os10t0485500-01 | Rice | cytosol | 34.45 | 30.71 |
| Solyc11g039960.1.1 | Tomato | nucleus | 32.01 | 30.7 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 34.15 | 30.52 |
| Solyc02g014090.2.1 | Tomato | nucleus | 32.93 | 30.08 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 34.76 | 28.64 |
| KRH38892 | Soybean | cytosol | 30.18 | 28.37 |
| CDY20605 | Canola | nucleus | 25.0 | 28.18 |
| CDX78327 | Canola | nucleus | 31.71 | 27.73 |
| KRH09395 | Soybean | nucleus | 29.88 | 27.68 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 19.21 | 27.39 |
| AT5G08200.1 | Thale cress | nucleus | 33.84 | 27.14 |
| Bra005977.1-P | Field mustard | nucleus | 33.23 | 27.11 |
| Bra008537.1-P | Field mustard | nucleus | 20.12 | 26.94 |
| AT5G23130.1 | Thale cress | nucleus | 32.32 | 26.7 |
| Bra013019.1-P | Field mustard | cytosol | 31.71 | 26.67 |
| CDY02209 | Canola | cytosol | 31.71 | 26.6 |
| CDY40759 | Canola | nucleus | 30.49 | 26.6 |
| Bra028667.1-P | Field mustard | nucleus | 30.49 | 26.6 |
| CDX81087 | Canola | nucleus | 30.49 | 26.53 |
| CDY21521 | Canola | nucleus | 33.23 | 26.08 |
| KRH40869 | Soybean | nucleus | 28.35 | 26.05 |
| KRG89129 | Soybean | nucleus | 28.05 | 25.99 |
| CDX69966 | Canola | nucleus | 32.62 | 25.48 |
| Bra009329.1-P | Field mustard | nucleus | 32.32 | 25.36 |
| CDY61916 | Canola | cytosol | 31.1 | 25.31 |
| KRH29144 | Soybean | nucleus | 20.12 | 25.19 |
| CDY44762 | Canola | nucleus | 29.57 | 22.61 |
Protein Annotations
| EnsemblPlants:Os06t0729900-00 | EnsemblPlantsGene:Os06g0729900 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF12 | ProteinID:BAS99640.1 | SEG:seg | UniParc:UPI000393BDB1 |
| UniProt:A0A0P0X1M6 | MapMan:35.2 | : | : | : | : |
Description
Similar to LysM domain containing protein. (Os06t0729900-00)
Coordinates
chr6:+:31105533..31107415
Molecular Weight (calculated)
35667.7 Da
IEP (calculated)
8.659
GRAVY (calculated)
-0.707
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MGISHPLSDD FDASPVLSPP PPPSSCCPPA HDDHYLEHQV SRMDTLPGLA IKYGISDIKR ANSLMTDSQM FAHKMLLIPL PGRPMPSSVR LNGSGQKMKR
101: DVTDSLDSSN YNSSKQQMSL AMSTLQSYYG LTPQNGAMTD AGTEMSLYSK GSLERINSET LVTSSRLPDT HNTDRSRNSE DTSNGFSATN GASGAKINGT
201: AKAKQDGSIR RRQKVEADQV SNTTDTQDDV FTDPIKMTKS LLPRPISSIR QNMDTSNPES SLKSNGSFLS GFRSVRKSPS TPNFADAENG ISMWSSSAWT
301: FNHESFTRPL LDGLPKPTAP RRTKAALD
101: DVTDSLDSSN YNSSKQQMSL AMSTLQSYYG LTPQNGAMTD AGTEMSLYSK GSLERINSET LVTSSRLPDT HNTDRSRNSE DTSNGFSATN GASGAKINGT
201: AKAKQDGSIR RRQKVEADQV SNTTDTQDDV FTDPIKMTKS LLPRPISSIR QNMDTSNPES SLKSNGSFLS GFRSVRKSPS TPNFADAENG ISMWSSSAWT
301: FNHESFTRPL LDGLPKPTAP RRTKAALD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.