CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09395	Soybean	nucleus	92.84	91.53
VIT_17s0053g00210.t01	Wine grape	cytosol	33.52	50.87
KRH40869	Soybean	nucleus	41.26	40.34
KRG89129	Soybean	nucleus	40.4	39.83
GSMUA_Achr4P29860_001	Banana	nucleus	36.96	39.45
GSMUA_Achr11P...	Banana	nucleus	40.4	38.95
GSMUA_Achr11P...	Banana	nucleus	38.68	38.03
Zm00001d032656_P001	Maize	nucleus	38.68	37.6
EER94055	Sorghum	nucleus	37.82	36.67
Zm00001d013983_P001	Maize	cytosol	36.96	35.93
TraesCS5A01G551300.1	Wheat	cytosol	35.24	35.76
Os10t0485500-01	Rice	cytosol	37.54	35.6
TraesCSU01G126200.1	Wheat	cytosol	34.96	35.16
TraesCS1B01G177500.1	Wheat	nucleus	35.82	34.82
TraesCS1A01G160800.1	Wheat	nucleus	35.53	34.73
GSMUA_Achr2P10710_001	Banana	nucleus	36.39	34.6
Zm00001d027325_P002	Maize	cytosol	29.51	34.33
TraesCS7D01G549400.1	Wheat	nucleus	31.81	33.84
TraesCS7A01G560400.1	Wheat	nucleus	31.23	33.33
TraesCS4B01G387000.1	Wheat	cytosol	33.52	33.24
EER95660	Sorghum	nucleus	32.66	32.57
KRH29144	Soybean	nucleus	24.07	32.06
TraesCS7B01G486800.1	Wheat	nucleus	29.8	31.23
Zm00001d048521_P001	Maize	nucleus	32.95	31.17
HORVU4Hr1G089910.8	Barley	cytosol	23.5	30.94
Os06t0729900-00	Rice	nucleus	28.37	30.18
EER89011	Sorghum	nucleus	28.94	29.71
HORVU1Hr1G042690.2	Barley	plastid	35.24	28.08
HORVU7Hr1G120120.1	Barley	cytosol	30.37	27.68
Zm00001d036338_P001	Maize	nucleus	24.07	26.92

Protein Annotations

EntrezGene:100786430	Gene3D:3.10.350.10	MapMan:35.2	EMBL:ACUP02005889	EMBL:BT095385	UniProt:C6TCT8
EnsemblPlantsGene:GLYMA_09G165100	InterPro:IPR018392	InterPro:IPR036779	EnsemblPlants:KRH38892	ProteinID:KRH38892	ProteinID:KRH38892.1
InterPro:LysM_dom	InterPro:LysM_dom_sf	PFscan:PS51782	PANTHER:PTHR20932	PANTHER:PTHR20932:SF11	SMART:SM00257
SUPFAM:SSF54106	UniParc:UPI0001B1633C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:38915446..38918923

Molecular Weight (calculated)

36986.5 Da

IEP (calculated)

8.705

GRAVY (calculated)

-0.560

Length

349 amino acids

Sequence
(BLAST)

001: MSPSNGLQNG GGGGGNGVSY IEHQVSKLDT LAGVAIKYGV EVADIKRMNG LATDLQMFAL KTLKIPLPGR HPPSPSPGPH EEPTKSGDAS SERKPLRIGQ
101: SAMKEPLQSL RLKPPQPNIS PAMSILQKFY GLKSSNSRDT LNGTEMAVYS SSTSDHSNGE WLPKALPISD LPSASNDYPR STNLVYDLLT GDDEYVPLAE
201: IGDAGAEKSD EKSVRRRQKA EVDNGASTPE KIMKEGNGNG SNGFSSTGKT LAMRPKSASR AALFPESESG WLDSIPVGLG ESIFTDGFSG VRKSSSASSL
301: REQEKNNSAA AWPPAIWGLK PDLQAAISKP IFDGLPIPIS GRRSKAALD

Best Arabidopsis Sequence Match ( AT5G08200.1 )
(BLAST)

001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD

Arabidopsis Description

At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.