Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G126200.1 | Wheat | cytosol | 83.81 | 85.01 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 82.39 | 84.3 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 50.0 | 66.42 |
| EER95660 | Sorghum | nucleus | 57.67 | 58.0 |
| Zm00001d027325_P002 | Maize | cytosol | 46.88 | 55.0 |
| Zm00001d048521_P001 | Maize | nucleus | 55.97 | 53.39 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 47.44 | 46.52 |
| PGSC0003DMT400027432 | Potato | cytosol | 36.93 | 39.16 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 35.8 | 38.53 |
| GSMUA_Achr11P... | Banana | nucleus | 38.64 | 38.31 |
| Solyc02g014090.2.1 | Tomato | nucleus | 37.78 | 37.05 |
| GSMUA_Achr11P... | Banana | nucleus | 38.07 | 37.02 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 36.93 | 35.42 |
| Solyc11g039960.1.1 | Tomato | nucleus | 33.81 | 34.8 |
| PGSC0003DMT400050883 | Potato | nucleus | 33.52 | 34.6 |
| KRH40869 | Soybean | nucleus | 34.38 | 33.89 |
| CDX78327 | Canola | nucleus | 36.08 | 33.87 |
| KRG89129 | Soybean | nucleus | 33.81 | 33.62 |
| KRH38892 | Soybean | cytosol | 33.24 | 33.52 |
| CDY20605 | Canola | nucleus | 27.56 | 33.33 |
| CDY40759 | Canola | nucleus | 35.23 | 32.98 |
| Bra028667.1-P | Field mustard | nucleus | 35.23 | 32.98 |
| KRH09395 | Soybean | nucleus | 32.95 | 32.77 |
| CDX81087 | Canola | nucleus | 34.94 | 32.63 |
| Bra005977.1-P | Field mustard | nucleus | 37.22 | 32.59 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 20.74 | 31.74 |
| CDY21521 | Canola | nucleus | 37.5 | 31.58 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 35.23 | 31.16 |
| Bra009329.1-P | Field mustard | nucleus | 36.93 | 31.1 |
| Bra008537.1-P | Field mustard | nucleus | 21.59 | 31.02 |
| CDX69966 | Canola | nucleus | 36.93 | 30.95 |
| AT5G08200.1 | Thale cress | nucleus | 35.8 | 30.81 |
| Bra013019.1-P | Field mustard | cytosol | 33.81 | 30.51 |
| CDY02209 | Canola | cytosol | 33.81 | 30.43 |
| AT5G23130.1 | Thale cress | nucleus | 32.67 | 28.97 |
| CDY61916 | Canola | cytosol | 32.67 | 28.54 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 26.99 | 28.53 |
| CDY44762 | Canola | nucleus | 34.66 | 28.44 |
| KRH29144 | Soybean | nucleus | 19.89 | 26.72 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G387000.1 | EnsemblPlantsGene:TraesCS4B01G387000 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF14 | PFscan:PS51782 | SEG:seg | SUPFAM:SSF54106 |
| TIGR:cd00118 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:665198497..665200800
Molecular Weight (calculated)
37877.8 Da
IEP (calculated)
8.807
GRAVY (calculated)
-0.530
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVHAAPFPF PPHPRRDPED DDDDILLGGG GDRWAAAAMA AEADAEQSPT PPPMSSCGCY ILHRVCRFDT LAGVAIKYGV EVADVKRVNG LTADLQMFAH
101: KTLRIPLPGR HPPAQHSPPS SSPAAAAAAR EWTTRRPPKN AAALDPFQKP PRGTVSPSMN LLQGYYGLAP PPKRDLTDQA AEMATAVRGQ HRKARSVSTT
201: GFPGVNGDAG WETDDAEKQI RRRQKADLEL TAMREDSGGA LLPRTGEGLA LRPKSGSRPD MNSSQQDLVA AGLVPSYGDG LLAVRKSSST PEFQDSDNNN
301: NIASVWLRSK WNLKPDAFAV PLQILLLDSL PKPLFDSLPK PIAAWRNKAA RD
101: KTLRIPLPGR HPPAQHSPPS SSPAAAAAAR EWTTRRPPKN AAALDPFQKP PRGTVSPSMN LLQGYYGLAP PPKRDLTDQA AEMATAVRGQ HRKARSVSTT
201: GFPGVNGDAG WETDDAEKQI RRRQKADLEL TAMREDSGGA LLPRTGEGLA LRPKSGSRPD MNSSQQDLVA AGLVPSYGDG LLAVRKSSST PEFQDSDNNN
301: NIASVWLRSK WNLKPDAFAV PLQILLLDSL PKPLFDSLPK PIAAWRNKAA RD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.