Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95660 | Sorghum | nucleus | 64.5 | 68.0 |
| Zm00001d027325_P002 | Maize | cytosol | 49.59 | 61.0 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 54.47 | 58.43 |
| TraesCSU01G126200.1 | Wheat | cytosol | 52.85 | 56.2 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 53.39 | 55.97 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 33.88 | 47.17 |
| Zm00001d013983_P001 | Maize | cytosol | 43.09 | 44.29 |
| Zm00001d032656_P001 | Maize | nucleus | 42.82 | 44.01 |
| PGSC0003DMT400027432 | Potato | cytosol | 33.06 | 36.75 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 30.89 | 34.86 |
| Solyc02g014090.2.1 | Tomato | nucleus | 33.6 | 34.54 |
| GSMUA_Achr11P... | Banana | nucleus | 33.06 | 34.37 |
| Solyc11g039960.1.1 | Tomato | nucleus | 31.17 | 33.63 |
| GSMUA_Achr11P... | Banana | nucleus | 32.79 | 33.43 |
| PGSC0003DMT400050883 | Potato | nucleus | 30.62 | 33.14 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 32.79 | 32.97 |
| KRH38892 | Soybean | cytosol | 31.17 | 32.95 |
| KRH09395 | Soybean | nucleus | 31.17 | 32.49 |
| KRH40869 | Soybean | nucleus | 31.17 | 32.21 |
| CDY20605 | Canola | nucleus | 25.2 | 31.96 |
| KRG89129 | Soybean | nucleus | 30.35 | 31.64 |
| CDX78327 | Canola | nucleus | 31.17 | 30.67 |
| Bra013019.1-P | Field mustard | cytosol | 32.25 | 30.51 |
| CDX81087 | Canola | nucleus | 31.17 | 30.5 |
| CDY02209 | Canola | cytosol | 31.71 | 29.92 |
| Bra005977.1-P | Field mustard | nucleus | 32.52 | 29.85 |
| Bra008537.1-P | Field mustard | nucleus | 19.78 | 29.8 |
| AT5G23130.1 | Thale cress | nucleus | 31.71 | 29.47 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 31.71 | 29.4 |
| CDY61916 | Canola | cytosol | 31.98 | 29.28 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 18.16 | 29.13 |
| CDY40759 | Canola | nucleus | 29.27 | 28.72 |
| CDY21521 | Canola | nucleus | 32.52 | 28.71 |
| Bra009329.1-P | Field mustard | nucleus | 32.25 | 28.47 |
| Bra028667.1-P | Field mustard | nucleus | 29.0 | 28.46 |
| AT5G08200.1 | Thale cress | nucleus | 31.44 | 28.36 |
| CDX69966 | Canola | nucleus | 32.25 | 28.33 |
| Zm00001d036338_P001 | Maize | nucleus | 23.58 | 27.88 |
| KRH29144 | Soybean | nucleus | 18.7 | 26.34 |
| CDY44762 | Canola | nucleus | 30.35 | 26.11 |
Protein Annotations
| EnsemblPlants:Zm00001d048521_P001 | EnsemblPlants:Zm00001d048521_T001 | EnsemblPlantsGene:Zm00001d048521 | EntrezGene:103639613 | Gene3D:3.10.350.10 | InterPro:IPR018392 |
| InterPro:IPR036779 | InterPro:LysM_dom | InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF14 | PFscan:PS51782 |
| ProteinID:AQL10090.1 | SEG:seg | UniParc:UPI0008442C2F | UniProt:A0A1D6PLK6 | MapMan:35.2 | : |
Description
peptidoglycan-binding LysM domain-containing protein
Coordinates
chr9:-:157718905..157721676
Molecular Weight (calculated)
39926.8 Da
IEP (calculated)
8.840
GRAVY (calculated)
-0.663
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVKQVLVRP RYGDGDGDDD GGTSSSSSTG RCDEDVVDQS PPPMSSCGRY LLHRVCRFDT LAGVAIKYGV EVADVKRANG LNADLQMFAH KTLRVPLHGS
101: HQPAAAPPSL PSYSPRNHAD RVASPFTGQI TSLEVGRFGH TPLRTGDVGR AVFHREWTTR RPPKNAASMD PFLKPPRSTV SPSMSLLQGY YGLPPTPQEN
201: LTYEGTEMAT YAQGHHRKAR SLSSSEHGDG ADDAEKPIRR RQKADSELTT GREDNGGCLL PRAGQGLALR PKSGSRPDGN GSQLDLSATW VPSYGDGLHT
301: VKKSSSTPEF QDSDSISIAS EWLKSKWNLK PDAFTLTLPP LPLLDSIPKP LLDNIPNSIA AWRNKAAKD
101: HQPAAAPPSL PSYSPRNHAD RVASPFTGQI TSLEVGRFGH TPLRTGDVGR AVFHREWTTR RPPKNAASMD PFLKPPRSTV SPSMSLLQGY YGLPPTPQEN
201: LTYEGTEMAT YAQGHHRKAR SLSSSEHGDG ADDAEKPIRR RQKADSELTT GREDNGGCLL PRAGQGLALR PKSGSRPDGN GSQLDLSATW VPSYGDGLHT
301: VKKSSSTPEF QDSDSISIAS EWLKSKWNLK PDAFTLTLPP LPLLDSIPKP LLDNIPNSIA AWRNKAAKD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.