Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20605 | Canola | nucleus | 72.15 | 93.47 |
| CDX78327 | Canola | nucleus | 88.33 | 88.8 |
| Bra005977.1-P | Field mustard | nucleus | 91.51 | 85.82 |
| CDY21521 | Canola | nucleus | 79.58 | 71.77 |
| CDX69966 | Canola | nucleus | 78.51 | 70.48 |
| AT5G08200.1 | Thale cress | nucleus | 76.13 | 70.17 |
| CDY40759 | Canola | nucleus | 68.7 | 68.88 |
| CDY44762 | Canola | nucleus | 70.82 | 62.24 |
| CDY02209 | Canola | cytosol | 57.03 | 54.99 |
| CDY61916 | Canola | cytosol | 57.29 | 53.6 |
| PGSC0003DMT400027432 | Potato | cytosol | 42.97 | 48.8 |
| Solyc11g039960.1.1 | Tomato | nucleus | 42.44 | 46.78 |
| PGSC0003DMT400050883 | Potato | nucleus | 42.18 | 46.63 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 40.05 | 46.18 |
| Solyc02g014090.2.1 | Tomato | nucleus | 42.97 | 45.13 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 46.95 | 44.47 |
| GSMUA_Achr11P... | Banana | nucleus | 39.52 | 41.16 |
| GSMUA_Achr11P... | Banana | nucleus | 38.2 | 40.56 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 38.99 | 40.05 |
| KRH29144 | Soybean | nucleus | 26.53 | 38.17 |
| Zm00001d032656_P001 | Maize | nucleus | 35.54 | 37.33 |
| Os10t0485500-01 | Rice | cytosol | 35.28 | 36.14 |
| EER94055 | Sorghum | nucleus | 34.48 | 36.11 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 33.95 | 35.65 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 33.69 | 35.57 |
| Zm00001d013983_P001 | Maize | cytosol | 33.42 | 35.1 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 32.63 | 34.94 |
| Zm00001d027325_P002 | Maize | cytosol | 27.59 | 34.67 |
| TraesCSU01G126200.1 | Wheat | cytosol | 31.83 | 34.58 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 29.71 | 34.15 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 31.03 | 34.01 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 29.44 | 33.95 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 28.91 | 32.73 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 22.55 | 32.08 |
| Zm00001d048521_P001 | Maize | nucleus | 30.5 | 31.17 |
| EER95660 | Sorghum | nucleus | 28.91 | 31.14 |
| Os06t0729900-00 | Rice | nucleus | 26.53 | 30.49 |
| Zm00001d036338_P001 | Maize | nucleus | 24.67 | 29.81 |
| HORVU1Hr1G042690.2 | Barley | plastid | 34.48 | 29.68 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 29.44 | 28.98 |
| EER89011 | Sorghum | nucleus | 25.99 | 28.82 |
Protein Annotations
| EnsemblPlants:CDX81087 | EnsemblPlantsGene:GSBRNA2T00134533001 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFscan:PS51782 | ProteinID:CDX81087 | ProteinID:CDX81087.1 |
| SEG:seg | SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI0004EE09EA | MapMan:35.2 | : |
Description
BnaC03g03410D
Coordinates
chrLK031823:+:1669028..1671284
Molecular Weight (calculated)
40522.6 Da
IEP (calculated)
9.693
GRAVY (calculated)
-0.613
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMDRERRLS ARNGSMRTPP EYTNGKFRDD NNGYGGGFLD RSEKSPSRSN ILRILLSPTS SPPPPPSGSS PERGYIEHRV SKFDTLAGIA IKYGVEVADV
101: KKMNGLVTDL QMFALKSLQI PLPGRHPPSP CLSNGSLNHG DGCSCHELEP PNHSNGDVFD SFQSLRLKSS EKKVSPAMNS LQGCYGLKPA NRTVSVGGSL
201: EMGNYKSLVN ALLEEINQSP DNTTHQDSSS DKLIRGRRKS GADFSSRTPE LLLKEENGSS NGGFLSIAGK GLALRSKASS RTSLSSAESE TTSNFNPVPI
301: NLMDAPVSDT FSSVRKSSSA SSLQDPDGSN GSSSLSLWPT SKWRLKPDLL TPAAITSSIF DGLPKPLTGR RNKAAMD
101: KKMNGLVTDL QMFALKSLQI PLPGRHPPSP CLSNGSLNHG DGCSCHELEP PNHSNGDVFD SFQSLRLKSS EKKVSPAMNS LQGCYGLKPA NRTVSVGGSL
201: EMGNYKSLVN ALLEEINQSP DNTTHQDSSS DKLIRGRRKS GADFSSRTPE LLLKEENGSS NGGFLSIAGK GLALRSKASS RTSLSSAESE TTSNFNPVPI
301: NLMDAPVSDT FSSVRKSSSA SSLQDPDGSN GSSSLSLWPT SKWRLKPDLL TPAAITSSIF DGLPKPLTGR RNKAAMD
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Arabidopsis Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.