Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400027432 | Potato | cytosol | 53.02 | 63.55 |
Solyc02g014090.2.1 | Tomato | nucleus | 53.02 | 58.77 |
VIT_17s0053g00210.t01 | Wine grape | cytosol | 31.41 | 54.35 |
KRH40869 | Soybean | nucleus | 48.49 | 54.06 |
VIT_17s0053g00240.t01 | Wine grape | cytosol | 15.33 | 53.98 |
KRG89129 | Soybean | nucleus | 47.74 | 53.67 |
Solyc11g039960.1.1 | Tomato | nucleus | 44.97 | 52.34 |
PGSC0003DMT400050883 | Potato | nucleus | 44.72 | 52.2 |
CDY20605 | Canola | nucleus | 36.93 | 50.52 |
GSMUA_Achr4P29860_001 | Banana | nucleus | 39.45 | 48.01 |
CDX78327 | Canola | nucleus | 44.97 | 47.73 |
CDX81087 | Canola | nucleus | 44.47 | 46.95 |
Bra005977.1-P | Field mustard | nucleus | 45.98 | 45.52 |
GSMUA_Achr11P... | Banana | nucleus | 39.95 | 44.79 |
AT5G08200.1 | Thale cress | nucleus | 45.73 | 44.5 |
Bra008537.1-P | Field mustard | nucleus | 27.39 | 44.49 |
CDY21521 | Canola | nucleus | 46.23 | 44.02 |
Bra009329.1-P | Field mustard | nucleus | 46.23 | 44.02 |
AT5G23130.1 | Thale cress | nucleus | 43.72 | 43.83 |
CDX69966 | Canola | nucleus | 46.23 | 43.81 |
CDY02209 | Canola | cytosol | 42.46 | 43.22 |
GSMUA_Achr11P... | Banana | nucleus | 39.2 | 43.09 |
Bra013019.1-P | Field mustard | cytosol | 41.71 | 42.56 |
GSMUA_Achr2P10710_001 | Banana | nucleus | 39.2 | 42.51 |
CDY40759 | Canola | nucleus | 39.95 | 42.29 |
Bra028667.1-P | Field mustard | nucleus | 39.7 | 42.02 |
CDY61916 | Canola | cytosol | 42.21 | 41.69 |
CDY44762 | Canola | nucleus | 41.21 | 38.23 |
Os10t0485500-01 | Rice | cytosol | 34.92 | 37.77 |
TraesCS5A01G551300.1 | Wheat | cytosol | 32.16 | 37.21 |
TraesCSU01G126200.1 | Wheat | cytosol | 32.41 | 37.18 |
TraesCS1A01G160800.1 | Wheat | nucleus | 33.17 | 36.97 |
EER94055 | Sorghum | nucleus | 33.17 | 36.67 |
Zm00001d013983_P001 | Maize | cytosol | 32.91 | 36.49 |
Zm00001d032656_P001 | Maize | nucleus | 32.66 | 36.21 |
TraesCS1B01G177500.1 | Wheat | nucleus | 32.41 | 35.93 |
TraesCS7A01G560400.1 | Wheat | nucleus | 29.4 | 35.78 |
EER95660 | Sorghum | nucleus | 31.41 | 35.71 |
TraesCS4B01G387000.1 | Wheat | cytosol | 31.16 | 35.23 |
Os06t0729900-00 | Rice | nucleus | 28.64 | 34.76 |
HORVU4Hr1G089910.8 | Barley | cytosol | 22.86 | 34.34 |
TraesCS7D01G549400.1 | Wheat | nucleus | 28.14 | 34.15 |
Zm00001d027325_P002 | Maize | cytosol | 24.87 | 33.0 |
Zm00001d048521_P001 | Maize | nucleus | 29.4 | 31.71 |
TraesCS7B01G486800.1 | Wheat | nucleus | 26.38 | 31.53 |
EER89011 | Sorghum | nucleus | 26.88 | 31.47 |
Zm00001d036338_P001 | Maize | nucleus | 24.37 | 31.09 |
HORVU1Hr1G042690.2 | Barley | plastid | 32.16 | 29.22 |
HORVU7Hr1G120120.1 | Barley | cytosol | 27.64 | 28.72 |
Protein Annotations
EntrezGene:100250730 | wikigene:100250730 | Gene3D:3.10.350.10 | MapMan:35.2 | ProteinID:CBI27141 | ProteinID:CBI27141.3 |
UniProt:D7T9H0 | EMBL:FN595752 | InterPro:IPR018392 | InterPro:IPR036779 | EntrezGene:LOC100250730 | wikigene:LOC100250730 |
InterPro:LysM_dom | InterPro:LysM_dom_sf | PFAM:PF01476 | PFscan:PS51782 | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 |
SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI00015C7819 | ArrayExpress:VIT_01s0011g02130 | EnsemblPlantsGene:VIT_01s0011g02130 | EnsemblPlants:VIT_01s0011g02130.t01 |
unigene:Vvi.17731 | RefSeq:XP_002277134 | RefSeq:XP_002277134.1 | RefSeq:XP_010648429.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr1:-:1819882..1823470
Molecular Weight (calculated)
44012.8 Da
IEP (calculated)
8.431
GRAVY (calculated)
-0.648
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MEREERRGSY YNYGDYDYEN GNCGRYRVES VMVERDRDNQ SPEMSSSWKI LPVSSCPSSS SGLGVGSIEH QVSKMDTLAG IAIKYGVEVA DIKRMNGLVT
101: DLQMFALRTL QIPLPGRHPP SPCLLNSSET PQRNSDWTPT DSVHRNLFET FQSLRVKSSS QRPVSPAMST LQGYYRLKPE DQRNAPKGFE MAVYRKESAH
201: YLEDGPFSKQ SSISNPLLSR VRKCRSLANG FMPENGEAAD DMTILEAKEG DYRWNEKLIR RRQKSETDFS CSPEMPLKED NRSGGGGGGF SAITGKGLAL
301: RTKAVNRTAT DADASLMNPI PVGLGDSIVT DSFAGVRKSS STSNLQDQDS AIFPSIWPTS MWNLKPDLQA LSTAAITRPI FDGLPKPITG RKNKAALD
101: DLQMFALRTL QIPLPGRHPP SPCLLNSSET PQRNSDWTPT DSVHRNLFET FQSLRVKSSS QRPVSPAMST LQGYYRLKPE DQRNAPKGFE MAVYRKESAH
201: YLEDGPFSKQ SSISNPLLSR VRKCRSLANG FMPENGEAAD DMTILEAKEG DYRWNEKLIR RRQKSETDFS CSPEMPLKED NRSGGGGGGF SAITGKGLAL
301: RTKAVNRTAT DADASLMNPI PVGLGDSIVT DSFAGVRKSS STSNLQDQDS AIFPSIWPTS MWNLKPDLQA LSTAAITRPI FDGLPKPITG RKNKAALD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.