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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • plasma membrane 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400027432 Potato cytosol 53.02 63.55
Solyc02g014090.2.1 Tomato nucleus 53.02 58.77
VIT_17s0053g00210.t01 Wine grape cytosol 31.41 54.35
KRH40869 Soybean nucleus 48.49 54.06
VIT_17s0053g00240.t01 Wine grape cytosol 15.33 53.98
KRG89129 Soybean nucleus 47.74 53.67
Solyc11g039960.1.1 Tomato nucleus 44.97 52.34
PGSC0003DMT400050883 Potato nucleus 44.72 52.2
CDY20605 Canola nucleus 36.93 50.52
GSMUA_Achr4P29860_001 Banana nucleus 39.45 48.01
CDX78327 Canola nucleus 44.97 47.73
CDX81087 Canola nucleus 44.47 46.95
Bra005977.1-P Field mustard nucleus 45.98 45.52
GSMUA_Achr11P... Banana nucleus 39.95 44.79
AT5G08200.1 Thale cress nucleus 45.73 44.5
Bra008537.1-P Field mustard nucleus 27.39 44.49
CDY21521 Canola nucleus 46.23 44.02
Bra009329.1-P Field mustard nucleus 46.23 44.02
AT5G23130.1 Thale cress nucleus 43.72 43.83
CDX69966 Canola nucleus 46.23 43.81
CDY02209 Canola cytosol 42.46 43.22
GSMUA_Achr11P... Banana nucleus 39.2 43.09
Bra013019.1-P Field mustard cytosol 41.71 42.56
GSMUA_Achr2P10710_001 Banana nucleus 39.2 42.51
CDY40759 Canola nucleus 39.95 42.29
Bra028667.1-P Field mustard nucleus 39.7 42.02
CDY61916 Canola cytosol 42.21 41.69
CDY44762 Canola nucleus 41.21 38.23
Os10t0485500-01 Rice cytosol 34.92 37.77
TraesCS5A01G551300.1 Wheat cytosol 32.16 37.21
TraesCSU01G126200.1 Wheat cytosol 32.41 37.18
TraesCS1A01G160800.1 Wheat nucleus 33.17 36.97
EER94055 Sorghum nucleus 33.17 36.67
Zm00001d013983_P001 Maize cytosol 32.91 36.49
Zm00001d032656_P001 Maize nucleus 32.66 36.21
TraesCS1B01G177500.1 Wheat nucleus 32.41 35.93
TraesCS7A01G560400.1 Wheat nucleus 29.4 35.78
EER95660 Sorghum nucleus 31.41 35.71
TraesCS4B01G387000.1 Wheat cytosol 31.16 35.23
Os06t0729900-00 Rice nucleus 28.64 34.76
HORVU4Hr1G089910.8 Barley cytosol 22.86 34.34
TraesCS7D01G549400.1 Wheat nucleus 28.14 34.15
Zm00001d027325_P002 Maize cytosol 24.87 33.0
Zm00001d048521_P001 Maize nucleus 29.4 31.71
TraesCS7B01G486800.1 Wheat nucleus 26.38 31.53
EER89011 Sorghum nucleus 26.88 31.47
Zm00001d036338_P001 Maize nucleus 24.37 31.09
HORVU1Hr1G042690.2 Barley plastid 32.16 29.22
HORVU7Hr1G120120.1 Barley cytosol 27.64 28.72
Protein Annotations
EntrezGene:100250730wikigene:100250730Gene3D:3.10.350.10MapMan:35.2ProteinID:CBI27141ProteinID:CBI27141.3
UniProt:D7T9H0EMBL:FN595752InterPro:IPR018392InterPro:IPR036779EntrezGene:LOC100250730wikigene:LOC100250730
InterPro:LysM_domInterPro:LysM_dom_sfPFAM:PF01476PFscan:PS51782PANTHER:PTHR20932PANTHER:PTHR20932:SF29
SMART:SM00257SUPFAM:SSF54106UniParc:UPI00015C7819ArrayExpress:VIT_01s0011g02130EnsemblPlantsGene:VIT_01s0011g02130EnsemblPlants:VIT_01s0011g02130.t01
unigene:Vvi.17731RefSeq:XP_002277134RefSeq:XP_002277134.1RefSeq:XP_010648429.1SEG:seg:
Description
No Description!
Coordinates
chr1:-:1819882..1823470
Molecular Weight (calculated)
44012.8 Da
IEP (calculated)
8.431
GRAVY (calculated)
-0.648
Length
398 amino acids
Sequence
(BLAST)
001: MEREERRGSY YNYGDYDYEN GNCGRYRVES VMVERDRDNQ SPEMSSSWKI LPVSSCPSSS SGLGVGSIEH QVSKMDTLAG IAIKYGVEVA DIKRMNGLVT
101: DLQMFALRTL QIPLPGRHPP SPCLLNSSET PQRNSDWTPT DSVHRNLFET FQSLRVKSSS QRPVSPAMST LQGYYRLKPE DQRNAPKGFE MAVYRKESAH
201: YLEDGPFSKQ SSISNPLLSR VRKCRSLANG FMPENGEAAD DMTILEAKEG DYRWNEKLIR RRQKSETDFS CSPEMPLKED NRSGGGGGGF SAITGKGLAL
301: RTKAVNRTAT DADASLMNPI PVGLGDSIVT DSFAGVRKSS STSNLQDQDS AIFPSIWPTS MWNLKPDLQA LSTAAITRPI FDGLPKPITG RKNKAALD
Best Arabidopsis Sequence Match ( AT5G23130.1 )
(BLAST)
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.