Factsheet for Bra009329.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69966	Canola	nucleus	99.52	99.05
Bra005977.1-P	Field mustard	nucleus	78.95	82.09
AT5G08200.1	Thale cress	nucleus	78.47	80.2
Bra028667.1-P	Field mustard	nucleus	68.9	76.6
Bra008537.1-P	Field mustard	nucleus	34.93	59.59
Bra013019.1-P	Field mustard	cytosol	53.83	57.69
PGSC0003DMT400027432	Potato	cytosol	40.91	51.51
PGSC0003DMT400050883	Potato	nucleus	40.19	49.27
Solyc11g039960.1.1	Tomato	nucleus	40.19	49.12
Solyc02g014090.2.1	Tomato	nucleus	41.87	48.75
GSMUA_Achr4P29860_001	Banana	nucleus	36.36	46.48
VIT_01s0011g02130.t01	Wine grape	nucleus	44.02	46.23
GSMUA_Achr11P...	Banana	nucleus	36.6	43.1
GSMUA_Achr11P...	Banana	nucleus	36.36	41.99
GSMUA_Achr2P10710_001	Banana	nucleus	35.65	40.6
KRH29144	Soybean	nucleus	25.36	40.46
Zm00001d032656_P001	Maize	nucleus	33.97	39.55
Os10t0485500-01	Rice	cytosol	33.97	38.59
TraesCS1B01G177500.1	Wheat	nucleus	33.01	38.44
TraesCS1A01G160800.1	Wheat	nucleus	32.78	38.38
EER94055	Sorghum	nucleus	33.01	38.33
Zm00001d013983_P001	Maize	cytosol	32.54	37.88
TraesCS4B01G387000.1	Wheat	cytosol	31.1	36.93
TraesCSU01G126200.1	Wheat	cytosol	30.62	36.89
TraesCS5A01G551300.1	Wheat	cytosol	29.67	36.05
TraesCS7A01G560400.1	Wheat	nucleus	27.51	35.17
TraesCS7D01G549400.1	Wheat	nucleus	27.51	35.06
Zm00001d027325_P002	Maize	cytosol	25.12	35.0
HORVU4Hr1G089910.8	Barley	cytosol	21.53	33.96
EER95660	Sorghum	nucleus	27.99	33.43
TraesCS7B01G486800.1	Wheat	nucleus	26.55	33.33
Os06t0729900-00	Rice	nucleus	25.36	32.32
Zm00001d048521_P001	Maize	nucleus	28.47	32.25
EER89011	Sorghum	nucleus	25.36	31.18
Zm00001d036338_P001	Maize	nucleus	23.21	31.09
HORVU1Hr1G042690.2	Barley	plastid	32.54	31.05
HORVU7Hr1G120120.1	Barley	cytosol	26.79	29.24

Protein Annotations

EnsemblPlants:Bra009329.1	EnsemblPlants:Bra009329.1-P	EnsemblPlantsGene:Bra009329	Gene3D:3.10.350.10	InterPro:IPR018392	InterPro:IPR036779
InterPro:LysM_dom	InterPro:LysM_dom_sf	PANTHER:PTHR20932	PANTHER:PTHR20932:SF29	PFscan:PS51782	SEG:seg
SMART:SM00257	SUPFAM:SSF54106	UniParc:UPI0002543D4C	UniProt:M4CYN2	MapMan:35.2	:

Description

AT5G08200 (E=2e-165) | peptidoglycan-binding LysM domain-containing protein

Coordinates

chrA10:+:16201476..16203473

Molecular Weight (calculated)

45689.9 Da

IEP (calculated)

9.594

GRAVY (calculated)

-0.841

Length

418 amino acids

Sequence
(BLAST)

001: MDRERRLSNR NGTPQYSNGK FRDDDCYGGF LDRLENSREK SPSRSKILRI PSPTSSPPPS SSSPPFPGSN SPDRGYIEHR VSKFDTLAGI AIKYGVEVAD
101: VKKMNGLVTD LQMFALKSLQ IPLPGRHPPS PCLSNGSLHH GEGCSCHELE PPNDSHNDMF DSFQSLRLKS SDKKVSPAMS SLQGYYGLKP ANRTVSEGGF
201: LEMGTYNNKT ETSHHHFSSN GSNNQYLRPF PSTNTPLNHH RKSRSLANAL FDEVNQSPDN NNTTAQETSA DKFRRRRQKS EADFSSRTPE LLLKEENSSS
301: NGGFLSIAGK GLALRSKASS RTNLSSAESE TSNFNPVPIN LMDAPVSDSF SSVRKSSSAS SLQDPEGNNS NGSSSLSLWP TSKWSLKPDL LTPAAITSSI
401: FDGLPKPLTG RKNKTAMD

Best Arabidopsis Sequence Match ( AT5G08200.1 )
(BLAST)

001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD

Arabidopsis Description

At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.