Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G177500.1 | Wheat | nucleus | 93.84 | 93.31 |
| Os10t0485500-01 | Rice | cytosol | 70.59 | 68.48 |
| HORVU1Hr1G042690.2 | Barley | plastid | 83.47 | 68.04 |
| Zm00001d013983_P001 | Maize | cytosol | 67.51 | 67.13 |
| EER94055 | Sorghum | nucleus | 67.51 | 66.94 |
| Zm00001d032656_P001 | Maize | nucleus | 66.95 | 66.57 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 48.74 | 50.58 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 41.18 | 44.95 |
| GSMUA_Achr11P... | Banana | nucleus | 42.02 | 41.44 |
| GSMUA_Achr11P... | Banana | nucleus | 41.18 | 41.41 |
| PGSC0003DMT400050883 | Potato | nucleus | 39.22 | 41.06 |
| Solyc11g039960.1.1 | Tomato | nucleus | 39.22 | 40.94 |
| PGSC0003DMT400027432 | Potato | cytosol | 37.25 | 40.06 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 39.78 | 38.69 |
| Solyc02g014090.2.1 | Tomato | nucleus | 37.25 | 37.05 |
| KRG89129 | Soybean | nucleus | 36.41 | 36.72 |
| KRH40869 | Soybean | nucleus | 35.85 | 35.85 |
| KRH09395 | Soybean | nucleus | 35.29 | 35.59 |
| KRH38892 | Soybean | cytosol | 34.73 | 35.53 |
| Bra005977.1-P | Field mustard | nucleus | 39.5 | 35.07 |
| CDY20605 | Canola | nucleus | 28.57 | 35.05 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 22.41 | 34.78 |
| CDX78327 | Canola | nucleus | 36.41 | 34.67 |
| AT5G23130.1 | Thale cress | nucleus | 38.1 | 34.26 |
| Bra028667.1-P | Field mustard | nucleus | 35.57 | 33.78 |
| CDY40759 | Canola | nucleus | 35.57 | 33.78 |
| CDX81087 | Canola | nucleus | 35.57 | 33.69 |
| AT5G08200.1 | Thale cress | nucleus | 38.38 | 33.5 |
| CDY21521 | Canola | nucleus | 39.22 | 33.49 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 36.97 | 33.17 |
| CDX69966 | Canola | nucleus | 38.66 | 32.86 |
| Bra009329.1-P | Field mustard | nucleus | 38.38 | 32.78 |
| CDY02209 | Canola | cytosol | 35.85 | 32.74 |
| Bra013019.1-P | Field mustard | cytosol | 35.29 | 32.31 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 29.13 | 31.8 |
| Bra008537.1-P | Field mustard | nucleus | 21.57 | 31.43 |
| CDY61916 | Canola | cytosol | 35.01 | 31.02 |
| CDY44762 | Canola | nucleus | 35.29 | 29.37 |
| KRH29144 | Soybean | nucleus | 21.01 | 28.63 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G160800.1 | EnsemblPlantsGene:TraesCS1A01G160800 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFscan:PS51782 | SEG:seg | SMART:SM00257 |
| SUPFAM:SSF54106 | TIGR:cd00118 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1A:+:289329903..289332793
Molecular Weight (calculated)
39223.1 Da
IEP (calculated)
8.606
GRAVY (calculated)
-0.736
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPHLPKDH AFPRANGFFD RRLCEIEEAD AAAALAADQS WSGSPSQSTS PSSASSLPMS SCGQYMLHRV GKFDTLAGVA IKYGVEVADV KRLNSLSTDL
101: QMFAHKTLRI PLPGRHPPPP FQQNGSYECD DRECTPRRLH DDLLESVLRT PRHKVSPAMS LLQGYYGLTP PPKRDPTQEG TEMPVYGKGK SISLVDEPWS
201: AETPSPNTFM FEHRKPRSQT MGSLVNGESE ENGDGERPIR RRPKADGELL PREENGSALL SRAGKGLALR PKSGTRPDMN KSHQNLIAMS EPSFDGGLQT
301: VKKSSSTPEF QEPESNSSSS SIWSASKWSL KPDAFALPLF DSIPKPIAAW KNKAARD
101: QMFAHKTLRI PLPGRHPPPP FQQNGSYECD DRECTPRRLH DDLLESVLRT PRHKVSPAMS LLQGYYGLTP PPKRDPTQEG TEMPVYGKGK SISLVDEPWS
201: AETPSPNTFM FEHRKPRSQT MGSLVNGESE ENGDGERPIR RRPKADGELL PREENGSALL SRAGKGLALR PKSGTRPDMN KSHQNLIAMS EPSFDGGLQT
301: VKKSSSTPEF QEPESNSSSS SIWSASKWSL KPDAFALPLF DSIPKPIAAW KNKAARD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.