Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013983_P001 | Maize | cytosol | 92.78 | 93.04 |
| Os10t0485500-01 | Rice | cytosol | 73.06 | 71.47 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 69.44 | 69.64 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 66.94 | 67.51 |
| HORVU1Hr1G042690.2 | Barley | plastid | 63.61 | 52.28 |
| EER95660 | Sorghum | nucleus | 46.11 | 47.43 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 43.06 | 47.4 |
| PGSC0003DMT400027432 | Potato | cytosol | 40.28 | 43.67 |
| GSMUA_Achr11P... | Banana | nucleus | 43.06 | 42.82 |
| GSMUA_Achr11P... | Banana | nucleus | 41.39 | 41.97 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 42.22 | 41.42 |
| Solyc02g014090.2.1 | Tomato | nucleus | 40.56 | 40.67 |
| Solyc11g039960.1.1 | Tomato | nucleus | 38.33 | 40.35 |
| PGSC0003DMT400050883 | Potato | nucleus | 38.06 | 40.18 |
| KRH38892 | Soybean | cytosol | 36.67 | 37.82 |
| KRH09395 | Soybean | nucleus | 36.94 | 37.57 |
| KRG89129 | Soybean | nucleus | 36.39 | 37.01 |
| CDY20605 | Canola | nucleus | 28.61 | 35.4 |
| AT5G23130.1 | Thale cress | nucleus | 38.61 | 35.01 |
| CDX78327 | Canola | nucleus | 36.39 | 34.93 |
| Bra013019.1-P | Field mustard | cytosol | 37.78 | 34.87 |
| Bra005977.1-P | Field mustard | nucleus | 38.89 | 34.83 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 22.22 | 34.78 |
| KRH40869 | Soybean | nucleus | 34.44 | 34.73 |
| EER89011 | Sorghum | nucleus | 32.78 | 34.71 |
| CDY02209 | Canola | cytosol | 37.5 | 34.53 |
| CDX81087 | Canola | nucleus | 36.11 | 34.48 |
| Bra028667.1-P | Field mustard | nucleus | 35.56 | 34.04 |
| CDY40759 | Canola | nucleus | 35.28 | 33.78 |
| CDY61916 | Canola | cytosol | 37.78 | 33.75 |
| AT5G08200.1 | Thale cress | nucleus | 38.06 | 33.5 |
| CDY21521 | Canola | nucleus | 38.61 | 33.25 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 36.67 | 33.17 |
| CDX69966 | Canola | nucleus | 38.61 | 33.1 |
| Bra008537.1-P | Field mustard | nucleus | 22.5 | 33.06 |
| Bra009329.1-P | Field mustard | nucleus | 38.33 | 33.01 |
| KRH29144 | Soybean | nucleus | 23.06 | 31.68 |
| CDY44762 | Canola | nucleus | 35.0 | 29.37 |
Protein Annotations
| EnsemblPlants:EER94055 | EnsemblPlantsGene:SORBI_3001G214200 | EntrezGene:8067130 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 |
| InterPro:LysM_dom | InterPro:LysM_dom_sf | ncoils:Coil | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFAM:PF01476 |
| PFscan:PS51782 | ProteinID:EER94055 | ProteinID:EER94055.1 | RefSeq:XP_002467057.1 | SEG:seg | SMART:SM00257 |
| SUPFAM:SSF54106 | unigene:Sbi.8810 | UniParc:UPI0001A828BA | UniProt:C5WYB0 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr1:-:19751397..19754812
Molecular Weight (calculated)
39385.4 Da
IEP (calculated)
8.205
GRAVY (calculated)
-0.679
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPHLPKDP TFPRTNGSLD GGARGLGEIE EVGAAATVAV EQSPPSQSSS PSASSPPAAM SSCGQYMLHR VRKLDTLAGV AIKYGVEVAD IKRLNGLSTD
101: LQMFAHKTLR IPLPGRHPPS SYQENGSYES DDRECTPRRI HEDILDSILK TPKPKVSPAM SLLQGYYGLA PPPKRDQTSE GTEMAVYSKG KSAFLDVEPW
201: LEPPNSDPFP LQNRKTRSLM IGSSLDGDTD ENGDSERFIR RRQKADGELL PREENGGDFL ASAGKGLALR PKSSNRPDMN KSQQNLFVMA EPLFVNGVQT
301: VRKSSSTPEF QEPETNTSSS IWSASKWSIN TDAFALPLPI PRFDNIPKPI AAWRNKAARD
101: LQMFAHKTLR IPLPGRHPPS SYQENGSYES DDRECTPRRI HEDILDSILK TPKPKVSPAM SLLQGYYGLA PPPKRDQTSE GTEMAVYSKG KSAFLDVEPW
201: LEPPNSDPFP LQNRKTRSLM IGSSLDGDTD ENGDSERFIR RRQKADGELL PREENGGDFL ASAGKGLALR PKSSNRPDMN KSQQNLFVMA EPLFVNGVQT
301: VRKSSSTPEF QEPETNTSSS IWSASKWSIN TDAFALPLPI PRFDNIPKPI AAWRNKAARD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.