Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G177500.1 | Wheat | nucleus | 69.41 | 84.68 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 68.04 | 83.47 |
| Os10t0485500-01 | Rice | cytosol | 54.79 | 65.22 |
| EER94055 | Sorghum | nucleus | 52.28 | 63.61 |
| Zm00001d013983_P001 | Maize | cytosol | 51.83 | 63.23 |
| Zm00001d032656_P001 | Maize | nucleus | 50.68 | 61.84 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 27.17 | 44.91 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 32.88 | 44.04 |
| GSMUA_Achr11P... | Banana | nucleus | 34.93 | 42.27 |
| GSMUA_Achr11P... | Banana | nucleus | 34.02 | 41.97 |
| Solyc11g039960.1.1 | Tomato | nucleus | 32.19 | 41.23 |
| PGSC0003DMT400050883 | Potato | nucleus | 31.96 | 41.06 |
| PGSC0003DMT400027432 | Potato | cytosol | 30.37 | 40.06 |
| KRG89129 | Soybean | nucleus | 31.05 | 38.42 |
| Solyc02g014090.2.1 | Tomato | nucleus | 31.28 | 38.16 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 31.96 | 38.15 |
| KRH40869 | Soybean | nucleus | 30.59 | 37.53 |
| KRH09395 | Soybean | nucleus | 28.77 | 35.59 |
| KRH38892 | Soybean | cytosol | 28.08 | 35.24 |
| CDX78327 | Canola | nucleus | 30.14 | 35.2 |
| Bra005977.1-P | Field mustard | nucleus | 32.19 | 35.07 |
| CDY20605 | Canola | nucleus | 23.29 | 35.05 |
| CDX81087 | Canola | nucleus | 29.68 | 34.48 |
| CDY40759 | Canola | nucleus | 29.45 | 34.31 |
| Bra028667.1-P | Field mustard | nucleus | 29.45 | 34.31 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 17.81 | 33.91 |
| Bra013019.1-P | Field mustard | cytosol | 29.91 | 33.59 |
| AT5G23130.1 | Thale cress | nucleus | 30.14 | 33.25 |
| AT5G08200.1 | Thale cress | nucleus | 30.82 | 33.01 |
| CDY02209 | Canola | cytosol | 29.45 | 32.99 |
| CDY21521 | Canola | nucleus | 31.28 | 32.78 |
| Bra009329.1-P | Field mustard | nucleus | 31.05 | 32.54 |
| CDX69966 | Canola | nucleus | 31.05 | 32.38 |
| CDY61916 | Canola | cytosol | 29.68 | 32.26 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 29.22 | 32.16 |
| Bra008537.1-P | Field mustard | nucleus | 17.81 | 31.84 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 26.71 | 30.55 |
| CDY44762 | Canola | nucleus | 29.0 | 29.6 |
| KRH29144 | Soybean | nucleus | 16.67 | 27.86 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G042690.2 | EnsemblPlantsGene:HORVU1Hr1G042690 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFscan:PS51782 | SEG:seg | SMART:SM00257 |
| SUPFAM:SSF54106 | UniParc:UPI000B4843DF | UniProt:A0A287FAV6 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr1H:+:309843827..309846871
Molecular Weight (calculated)
47506.1 Da
IEP (calculated)
10.130
GRAVY (calculated)
-0.741
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: DPEPRQTKQP RGSSLSLSPP HPASPLLPPS LLPGRQFLRH HPPPTPAAAG IRRIGRRARG APPANPGRPR PDPPPAAPPD VMSRPHLPKD HAFPRANGFF
101: DGRLCEIEEA DAAAALAAAD QSWSGSPSQS TSPSSASSLP MSSCGQYMLH RVGKFDTLAG VAIKYGVEVA DVKRLNSLST DLQMFAHKTL RIPLPGRHPH
201: SPFQQNGSYE CGDRECTPRR LHDDLLDSVL RTPRHKVSPA MSLLQGYYGL TPPPKRNPTQ EGTEIALYGK GKSISLVDEP WSAETPNPNT FMFEHRKPRS
301: QTIGSLVNGE SEENGDGERP VRRRPKADGE LLPREENGSA LLSRAGKGLA LRPKSGTRPD MNKSHQNLIA MSEPSFDGGL QTVKKSSSTP EFQEPESSSG
401: SSIWSASKWS LKPDAFALPL FDSIPKPIAA WKNKAARD
101: DGRLCEIEEA DAAAALAAAD QSWSGSPSQS TSPSSASSLP MSSCGQYMLH RVGKFDTLAG VAIKYGVEVA DVKRLNSLST DLQMFAHKTL RIPLPGRHPH
201: SPFQQNGSYE CGDRECTPRR LHDDLLDSVL RTPRHKVSPA MSLLQGYYGL TPPPKRNPTQ EGTEIALYGK GKSISLVDEP WSAETPNPNT FMFEHRKPRS
301: QTIGSLVNGE SEENGDGERP VRRRPKADGE LLPREENGSA LLSRAGKGLA LRPKSGTRPD MNKSHQNLIA MSEPSFDGGL QTVKKSSSTP EFQEPESSSG
401: SSIWSASKWS LKPDAFALPL FDSIPKPIAA WKNKAARD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.