Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G551300.1 | Wheat | cytosol | 68.3 | 52.62 |
| TraesCSU01G126200.1 | Wheat | cytosol | 68.68 | 52.45 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 66.42 | 50.0 |
| EER95660 | Sorghum | nucleus | 49.81 | 37.71 |
| Zm00001d048521_P001 | Maize | nucleus | 47.17 | 33.88 |
| Zm00001d027325_P002 | Maize | cytosol | 33.58 | 29.67 |
| PGSC0003DMT400027432 | Potato | cytosol | 35.09 | 28.01 |
| HORVU1Hr1G042690.2 | Barley | plastid | 44.91 | 27.17 |
| Solyc02g014090.2.1 | Tomato | nucleus | 36.23 | 26.74 |
| GSMUA_Achr11P... | Banana | nucleus | 35.47 | 26.48 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 32.45 | 26.3 |
| GSMUA_Achr11P... | Banana | nucleus | 35.85 | 26.24 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 34.72 | 25.07 |
| KRH29144 | Soybean | nucleus | 24.53 | 24.81 |
| KRH09395 | Soybean | nucleus | 32.83 | 24.58 |
| KRG89129 | Soybean | nucleus | 32.83 | 24.58 |
| Solyc11g039960.1.1 | Tomato | nucleus | 31.7 | 24.56 |
| CDY40759 | Canola | nucleus | 34.72 | 24.47 |
| Bra028667.1-P | Field mustard | nucleus | 34.72 | 24.47 |
| PGSC0003DMT400050883 | Potato | nucleus | 31.32 | 24.34 |
| KRH38892 | Soybean | cytosol | 30.94 | 23.5 |
| KRH40869 | Soybean | nucleus | 31.32 | 23.25 |
| CDX78327 | Canola | nucleus | 32.45 | 22.93 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 34.34 | 22.86 |
| CDX81087 | Canola | nucleus | 32.08 | 22.55 |
| CDY21521 | Canola | nucleus | 34.72 | 22.01 |
| Bra005977.1-P | Field mustard | nucleus | 33.21 | 21.89 |
| AT5G08200.1 | Thale cress | nucleus | 33.58 | 21.76 |
| Bra013019.1-P | Field mustard | cytosol | 31.7 | 21.54 |
| Bra009329.1-P | Field mustard | nucleus | 33.96 | 21.53 |
| CDX69966 | Canola | nucleus | 33.96 | 21.43 |
| AT5G23130.1 | Thale cress | nucleus | 31.7 | 21.16 |
| CDY02209 | Canola | cytosol | 30.94 | 20.97 |
| CDY20605 | Canola | nucleus | 22.64 | 20.62 |
| CDY61916 | Canola | cytosol | 30.57 | 20.1 |
| CDY44762 | Canola | nucleus | 32.08 | 19.81 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 24.53 | 16.97 |
| Bra008537.1-P | Field mustard | nucleus | 15.47 | 16.73 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 12.08 | 13.91 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G089910.8 | EnsemblPlantsGene:HORVU4Hr1G089910 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF14 | PFscan:PS51782 | SEG:seg | SUPFAM:SSF54106 |
| UniParc:UPI000B461EEF | UniProt:A0A287Q3S2 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:643754944..643757160
Molecular Weight (calculated)
29251.6 Da
IEP (calculated)
9.967
GRAVY (calculated)
-0.725
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: WASTRRPPPF HPSPFPAXEE DHHHHHDVLA GDRWGAHRWG AMPMSPTPPP MSSCGRYILH RVCRFDTLAG VAIKYGVEVA DVKRVNGLTA DLQMFAHKTL
101: RIPLPGRHPP AQHSPPSSSP AAAARCLHSC THRPVEWTTR RPPKNAALDS FMKPPRGTVS PSMSLLQGYY GLAPPPKRDL ADETVEMVAT AVKGQHRKAR
201: SISTGFTVEN GDASWEIDDA EKQIRRRQKA DIELTAMRED NNGGALLPRN GKAWRSDQSR EADPT
101: RIPLPGRHPP AQHSPPSSSP AAAARCLHSC THRPVEWTTR RPPKNAALDS FMKPPRGTVS PSMSLLQGYY GLAPPPKRDL ADETVEMVAT AVKGQHRKAR
201: SISTGFTVEN GDASWEIDDA EKQIRRRQKA DIELTAMRED NNGGALLPRN GKAWRSDQSR EADPT
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.