Factsheet for Bra013019.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008537.1-P	Field mustard	nucleus	58.46	93.06
CDY02209	Canola	cytosol	92.05	91.82
AT5G23130.1	Thale cress	nucleus	66.67	65.49
Bra005977.1-P	Field mustard	nucleus	59.23	57.46
Bra028667.1-P	Field mustard	nucleus	52.05	53.99
Bra009329.1-P	Field mustard	nucleus	57.69	53.83
PGSC0003DMT400027432	Potato	cytosol	39.74	46.69
GSMUA_Achr4P29860_001	Banana	nucleus	37.18	44.34
Solyc02g014090.2.1	Tomato	nucleus	40.26	43.73
PGSC0003DMT400050883	Potato	nucleus	38.21	43.7
Solyc11g039960.1.1	Tomato	nucleus	38.21	43.57
VIT_01s0011g02130.t01	Wine grape	nucleus	42.56	41.71
GSMUA_Achr11P...	Banana	nucleus	36.67	40.28
GSMUA_Achr11P...	Banana	nucleus	36.67	39.5
GSMUA_Achr2P10710_001	Banana	nucleus	36.15	38.42
EER94055	Sorghum	nucleus	34.87	37.78
Zm00001d013983_P001	Maize	cytosol	34.36	37.33
Os10t0485500-01	Rice	cytosol	35.13	37.23
Zm00001d032656_P001	Maize	nucleus	33.08	35.93
KRH29144	Soybean	nucleus	24.1	35.88
TraesCS7A01G560400.1	Wheat	nucleus	30.0	35.78
TraesCS1B01G177500.1	Wheat	nucleus	32.82	35.65
TraesCS1A01G160800.1	Wheat	nucleus	32.31	35.29
TraesCS5A01G551300.1	Wheat	cytosol	30.51	34.59
TraesCSU01G126200.1	Wheat	cytosol	30.77	34.58
TraesCS7D01G549400.1	Wheat	nucleus	28.72	34.15
TraesCS4B01G387000.1	Wheat	cytosol	30.51	33.81
EER95660	Sorghum	nucleus	29.74	33.14
Zm00001d027325_P002	Maize	cytosol	25.38	33.0
TraesCS7B01G486800.1	Wheat	nucleus	27.95	32.73
Zm00001d048521_P001	Maize	nucleus	30.51	32.25
Zm00001d036338_P001	Maize	nucleus	25.64	32.05
Os06t0729900-00	Rice	nucleus	26.67	31.71
HORVU4Hr1G089910.8	Barley	cytosol	21.54	31.7
EER89011	Sorghum	nucleus	27.18	31.18
HORVU1Hr1G042690.2	Barley	plastid	33.59	29.91
HORVU7Hr1G120120.1	Barley	cytosol	29.23	29.77

Protein Annotations

EnsemblPlants:Bra013019.1	EnsemblPlants:Bra013019.1-P	EnsemblPlantsGene:Bra013019	Gene3D:3.10.350.10	InterPro:IPR018392	InterPro:IPR036779
InterPro:LysM_dom	InterPro:LysM_dom_sf	PANTHER:PTHR20932	PANTHER:PTHR20932:SF29	PFAM:PF01476	PFscan:PS51782
SEG:seg	SMART:SM00257	SUPFAM:SSF54106	UniParc:UPI000254048C	UniProt:M4D959	MapMan:35.2

Description

AT5G23130 (E=1e-111) | peptidoglycan-binding LysM domain-containing protein

Coordinates

chrA03:-:20967610..20969223

Molecular Weight (calculated)

42110.6 Da

IEP (calculated)

10.187

GRAVY (calculated)

-0.574

Length

390 amino acids

Sequence
(BLAST)

001: MLTDRGRRVS ICIGTLEYGN RKFRGGGGNG CYGGFVDRSS ERCRDWSPSK SSTSRILRIS SPTTSPPSSA TSPVSLNCSF SNGAGYIEHR VSKFDTLAGI
101: AIKYGVEVAD ITKLNGLVTD LQMFALKSLR IPLPGRHPPS PCLSNASLNH GEDCSEPAAS SSASNGNLQD VFDPFQSLKL KPSETKISPA MDSLQGYYGL
201: KPTNERASYP QEDNGHQYLT PTSTPLNQHR KSRSLVDAVI AEVNQSSYHQ SKEVDSDKPT RRRQKSEADF SSRTPELLLK KESRSSCGGF SAIAGKGLAL
301: RPKAVSKTNL SAPVPINAPV GDSFSSVRKS FSASVLQEPV SNNKGSSSSL WQSSKWTLKA DLLQQAAMAR SIFDGLPKPL TGRRNKKAMD

Best Arabidopsis Sequence Match ( AT5G23130.1 )
(BLAST)

001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD

Arabidopsis Description

Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.