Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EER95660 | Sorghum | nucleus | 63.33 | 54.29 |
Zm00001d048521_P001 | Maize | nucleus | 61.0 | 49.59 |
TraesCS5A01G551300.1 | Wheat | cytosol | 54.0 | 47.09 |
TraesCS4B01G387000.1 | Wheat | cytosol | 55.0 | 46.88 |
TraesCSU01G126200.1 | Wheat | cytosol | 54.0 | 46.69 |
Zm00001d013983_P001 | Maize | cytosol | 42.0 | 35.1 |
Zm00001d032656_P001 | Maize | nucleus | 41.67 | 34.82 |
HORVU4Hr1G089910.8 | Barley | cytosol | 29.67 | 33.58 |
GSMUA_Achr4P29860_001 | Banana | nucleus | 36.0 | 33.03 |
GSMUA_Achr11P... | Banana | nucleus | 37.67 | 31.83 |
PGSC0003DMT400027432 | Potato | cytosol | 33.33 | 30.12 |
KRH38892 | Soybean | cytosol | 34.33 | 29.51 |
GSMUA_Achr11P... | Banana | nucleus | 35.0 | 29.01 |
Solyc11g039960.1.1 | Tomato | nucleus | 33.0 | 28.95 |
GSMUA_Achr2P10710_001 | Banana | nucleus | 35.33 | 28.88 |
CDY20605 | Canola | nucleus | 28.0 | 28.87 |
KRH09395 | Soybean | nucleus | 34.0 | 28.81 |
Solyc02g014090.2.1 | Tomato | nucleus | 34.33 | 28.69 |
KRG89129 | Soybean | nucleus | 33.33 | 28.25 |
PGSC0003DMT400050883 | Potato | nucleus | 32.0 | 28.15 |
CDX78327 | Canola | nucleus | 35.0 | 28.0 |
KRH40869 | Soybean | nucleus | 33.0 | 27.73 |
CDX81087 | Canola | nucleus | 34.67 | 27.59 |
Bra005977.1-P | Field mustard | nucleus | 35.67 | 26.62 |
Bra013019.1-P | Field mustard | cytosol | 33.0 | 25.38 |
CDY21521 | Canola | nucleus | 35.33 | 25.36 |
CDY02209 | Canola | cytosol | 33.0 | 25.32 |
AT5G08200.1 | Thale cress | nucleus | 34.33 | 25.18 |
Bra009329.1-P | Field mustard | nucleus | 35.0 | 25.12 |
CDX69966 | Canola | nucleus | 35.0 | 25.0 |
CDY40759 | Canola | nucleus | 31.33 | 25.0 |
Bra028667.1-P | Field mustard | nucleus | 31.33 | 25.0 |
AT5G23130.1 | Thale cress | nucleus | 33.0 | 24.94 |
VIT_01s0011g02130.t01 | Wine grape | nucleus | 33.0 | 24.87 |
CDY61916 | Canola | cytosol | 33.33 | 24.81 |
Zm00001d036338_P001 | Maize | nucleus | 25.67 | 24.68 |
Bra008537.1-P | Field mustard | nucleus | 19.33 | 23.67 |
KRH29144 | Soybean | nucleus | 19.67 | 22.52 |
CDY44762 | Canola | nucleus | 31.67 | 22.14 |
VIT_17s0053g00210.t01 | Wine grape | cytosol | 15.0 | 19.57 |
Protein Annotations
EnsemblPlants:Zm00001d027325_P002 | EnsemblPlants:Zm00001d027325_T002 | EnsemblPlantsGene:Zm00001d027325 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 |
InterPro:LysM_dom | InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF14 | PFscan:PS51782 | ProteinID:ONL92794.1 |
SEG:seg | SUPFAM:SSF54106 | UniParc:UPI0008434467 | UniProt:A0A1D6JKU8 | MapMan:35.2 | : |
Description
peptidoglycan-binding LysM domain-containing protein
Coordinates
chr1:+:2974258..2976935
Molecular Weight (calculated)
32624.1 Da
IEP (calculated)
10.282
GRAVY (calculated)
-0.346
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVKQVLVRP RYGDEDVVDQ SPPPPMSSSP CGRYVHHRVC RFDTLAGVAI KYGVEVADVK RANGLTTDLQ MFAHKTLRVP LHGRHAPSPP SSSPSHAARF
101: LMALTHVSDV RPSTTWFCFR EWTKNAASLD PLLKLKPPRS TVSPSMSLLL QGCHGLTPAP KGDLNLTDEC AQGHHRKAGS LSSTLLPRRA GQGLALRPKS
201: GGRADTNGIQ QDLLAAWVPS YGDGLRAVKR SSSAPEFQDS DSVSLASAWL KSKWNLKPDY AFTLALFDGI SKPLLDSIPK PLLDNIPNSI VAWRNKAARD
101: LMALTHVSDV RPSTTWFCFR EWTKNAASLD PLLKLKPPRS TVSPSMSLLL QGCHGLTPAP KGDLNLTDEC AQGHHRKAGS LSSTLLPRRA GQGLALRPKS
201: GGRADTNGIQ QDLLAAWVPS YGDGLRAVKR SSSAPEFQDS DSVSLASAWL KSKWNLKPDY AFTLALFDGI SKPLLDSIPK PLLDNIPNSI VAWRNKAARD
001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
Arabidopsis Description
F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.