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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER95660 Sorghum nucleus 63.33 54.29
Zm00001d048521_P001 Maize nucleus 61.0 49.59
TraesCS5A01G551300.1 Wheat cytosol 54.0 47.09
TraesCS4B01G387000.1 Wheat cytosol 55.0 46.88
TraesCSU01G126200.1 Wheat cytosol 54.0 46.69
Zm00001d013983_P001 Maize cytosol 42.0 35.1
Zm00001d032656_P001 Maize nucleus 41.67 34.82
HORVU4Hr1G089910.8 Barley cytosol 29.67 33.58
GSMUA_Achr4P29860_001 Banana nucleus 36.0 33.03
GSMUA_Achr11P... Banana nucleus 37.67 31.83
PGSC0003DMT400027432 Potato cytosol 33.33 30.12
KRH38892 Soybean cytosol 34.33 29.51
GSMUA_Achr11P... Banana nucleus 35.0 29.01
Solyc11g039960.1.1 Tomato nucleus 33.0 28.95
GSMUA_Achr2P10710_001 Banana nucleus 35.33 28.88
CDY20605 Canola nucleus 28.0 28.87
KRH09395 Soybean nucleus 34.0 28.81
Solyc02g014090.2.1 Tomato nucleus 34.33 28.69
KRG89129 Soybean nucleus 33.33 28.25
PGSC0003DMT400050883 Potato nucleus 32.0 28.15
CDX78327 Canola nucleus 35.0 28.0
KRH40869 Soybean nucleus 33.0 27.73
CDX81087 Canola nucleus 34.67 27.59
Bra005977.1-P Field mustard nucleus 35.67 26.62
Bra013019.1-P Field mustard cytosol 33.0 25.38
CDY21521 Canola nucleus 35.33 25.36
CDY02209 Canola cytosol 33.0 25.32
AT5G08200.1 Thale cress nucleus 34.33 25.18
Bra009329.1-P Field mustard nucleus 35.0 25.12
CDX69966 Canola nucleus 35.0 25.0
CDY40759 Canola nucleus 31.33 25.0
Bra028667.1-P Field mustard nucleus 31.33 25.0
AT5G23130.1 Thale cress nucleus 33.0 24.94
VIT_01s0011g02130.t01 Wine grape nucleus 33.0 24.87
CDY61916 Canola cytosol 33.33 24.81
Zm00001d036338_P001 Maize nucleus 25.67 24.68
Bra008537.1-P Field mustard nucleus 19.33 23.67
KRH29144 Soybean nucleus 19.67 22.52
CDY44762 Canola nucleus 31.67 22.14
VIT_17s0053g00210.t01 Wine grape cytosol 15.0 19.57
Protein Annotations
EnsemblPlants:Zm00001d027325_P002EnsemblPlants:Zm00001d027325_T002EnsemblPlantsGene:Zm00001d027325Gene3D:3.10.350.10InterPro:IPR018392InterPro:IPR036779
InterPro:LysM_domInterPro:LysM_dom_sfPANTHER:PTHR20932PANTHER:PTHR20932:SF14PFscan:PS51782ProteinID:ONL92794.1
SEG:segSUPFAM:SSF54106UniParc:UPI0008434467UniProt:A0A1D6JKU8MapMan:35.2:
Description
peptidoglycan-binding LysM domain-containing protein
Coordinates
chr1:+:2974258..2976935
Molecular Weight (calculated)
32624.1 Da
IEP (calculated)
10.282
GRAVY (calculated)
-0.346
Length
300 amino acids
Sequence
(BLAST)
001: MGVKQVLVRP RYGDEDVVDQ SPPPPMSSSP CGRYVHHRVC RFDTLAGVAI KYGVEVADVK RANGLTTDLQ MFAHKTLRVP LHGRHAPSPP SSSPSHAARF
101: LMALTHVSDV RPSTTWFCFR EWTKNAASLD PLLKLKPPRS TVSPSMSLLL QGCHGLTPAP KGDLNLTDEC AQGHHRKAGS LSSTLLPRRA GQGLALRPKS
201: GGRADTNGIQ QDLLAAWVPS YGDGLRAVKR SSSAPEFQDS DSVSLASAWL KSKWNLKPDY AFTLALFDGI SKPLLDSIPK PLLDNIPNSI VAWRNKAARD
Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)
001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N
Arabidopsis Description
F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.