Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048521_P001 | Maize | nucleus | 68.0 | 64.5 |
| Zm00001d027325_P002 | Maize | cytosol | 54.29 | 63.33 |
| TraesCSU01G126200.1 | Wheat | cytosol | 60.0 | 60.52 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 58.29 | 59.3 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 58.0 | 57.67 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 37.71 | 49.81 |
| EER94055 | Sorghum | nucleus | 47.43 | 46.11 |
| GSMUA_Achr11P... | Banana | nucleus | 39.43 | 38.87 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 36.0 | 38.53 |
| PGSC0003DMT400027432 | Potato | cytosol | 35.43 | 37.35 |
| Solyc02g014090.2.1 | Tomato | nucleus | 36.29 | 35.38 |
| GSMUA_Achr11P... | Banana | nucleus | 36.57 | 35.36 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 36.29 | 34.6 |
| Solyc11g039960.1.1 | Tomato | nucleus | 33.71 | 34.5 |
| PGSC0003DMT400050883 | Potato | nucleus | 33.43 | 34.31 |
| KRH09395 | Soybean | nucleus | 33.43 | 33.05 |
| KRH38892 | Soybean | cytosol | 32.57 | 32.66 |
| KRG89129 | Soybean | nucleus | 32.0 | 31.64 |
| Bra008537.1-P | Field mustard | nucleus | 22.0 | 31.43 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 35.71 | 31.41 |
| KRH40869 | Soybean | nucleus | 32.0 | 31.37 |
| CDY20605 | Canola | nucleus | 25.43 | 30.58 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 20.0 | 30.43 |
| CDX78327 | Canola | nucleus | 32.29 | 30.13 |
| EER89011 | Sorghum | nucleus | 29.14 | 30.0 |
| Bra013019.1-P | Field mustard | cytosol | 33.14 | 29.74 |
| CDY02209 | Canola | cytosol | 33.14 | 29.67 |
| Bra005977.1-P | Field mustard | nucleus | 33.43 | 29.1 |
| Bra028667.1-P | Field mustard | nucleus | 31.14 | 28.99 |
| CDX81087 | Canola | nucleus | 31.14 | 28.91 |
| AT5G08200.1 | Thale cress | nucleus | 33.71 | 28.85 |
| CDY40759 | Canola | nucleus | 30.86 | 28.72 |
| AT5G23130.1 | Thale cress | nucleus | 32.29 | 28.46 |
| KRH29144 | Soybean | nucleus | 21.14 | 28.24 |
| CDY21521 | Canola | nucleus | 33.71 | 28.23 |
| CDY61916 | Canola | cytosol | 32.29 | 28.04 |
| Bra009329.1-P | Field mustard | nucleus | 33.43 | 27.99 |
| CDX69966 | Canola | nucleus | 33.43 | 27.86 |
| CDY44762 | Canola | nucleus | 32.29 | 26.34 |
Protein Annotations
| EnsemblPlants:EER95660 | EnsemblPlantsGene:SORBI_3001G536100 | EntrezGene:8059500 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 |
| InterPro:LysM_dom | InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF14 | PFscan:PS51782 | ProteinID:EER95660 |
| ProteinID:EER95660.1 | RefSeq:XP_002468662.1 | SEG:seg | unigene:Sbi.8818 | UniParc:UPI0001A832C0 | UniProt:C5WMN3 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:79944697..79947861
Molecular Weight (calculated)
37926.6 Da
IEP (calculated)
9.509
GRAVY (calculated)
-0.644
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVKQVLVRP RYGDDDDGSS CSTGSSSSAG RCDDEALDQS PSPPPMSSCG RYLLHRVCRF DTLAGVAIKY GVEVADVKRA NGLTTDLQMF AHKTLRVPLH
101: GRHAPATAPS PPSSSPSHAD RAAREWTTRR PPKIAASLDP FLKPPRSTVS QSMSLLQGYY GLTPTPKENL TNEGTEMAAY AKGHHRKARS LSSNFSLENG
201: DGTREMDDAE KPIRRRQKTD GEVTAREDNG GSMLARSGQG LALRPKSGSR PDMNGSQQDL LATWVPSYGD GLHAVKKSSS TPEFQDSDSI SIASVWLKSK
301: WNLKPDAFTL TLPLPLFDGI SKPLFDSIPK PLLDNIPNSI AAWRNKAAKD
101: GRHAPATAPS PPSSSPSHAD RAAREWTTRR PPKIAASLDP FLKPPRSTVS QSMSLLQGYY GLTPTPKENL TNEGTEMAAY AKGHHRKARS LSSNFSLENG
201: DGTREMDDAE KPIRRRQKTD GEVTAREDNG GSMLARSGQG LALRPKSGSR PDMNGSQQDL LATWVPSYGD GLHAVKKSSS TPEFQDSDSI SIASVWLKSK
301: WNLKPDAFTL TLPLPLFDGI SKPLFDSIPK PLLDNIPNSI AAWRNKAAKD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.