Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013019.1-P | Field mustard | cytosol | 91.82 | 92.05 |
| CDY61916 | Canola | cytosol | 81.33 | 78.91 |
| AT5G23130.1 | Thale cress | nucleus | 66.75 | 65.74 |
| CDY20605 | Canola | nucleus | 44.76 | 60.14 |
| CDX78327 | Canola | nucleus | 54.99 | 57.33 |
| CDX81087 | Canola | nucleus | 54.99 | 57.03 |
| CDY21521 | Canola | nucleus | 59.08 | 55.26 |
| CDX69966 | Canola | nucleus | 58.31 | 54.29 |
| CDY40759 | Canola | nucleus | 51.66 | 53.72 |
| CDY44762 | Canola | nucleus | 52.94 | 48.25 |
| PGSC0003DMT400027432 | Potato | cytosol | 39.9 | 46.99 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 37.08 | 44.34 |
| Solyc02g014090.2.1 | Tomato | nucleus | 40.41 | 44.01 |
| PGSC0003DMT400050883 | Potato | nucleus | 38.11 | 43.7 |
| Solyc11g039960.1.1 | Tomato | nucleus | 38.11 | 43.57 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 43.22 | 42.46 |
| GSMUA_Achr11P... | Banana | nucleus | 36.83 | 39.78 |
| GSMUA_Achr11P... | Banana | nucleus | 36.06 | 39.72 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 36.32 | 38.69 |
| EER94055 | Sorghum | nucleus | 34.53 | 37.5 |
| Os10t0485500-01 | Rice | cytosol | 35.29 | 37.5 |
| Zm00001d013983_P001 | Maize | cytosol | 34.02 | 37.05 |
| Zm00001d032656_P001 | Maize | nucleus | 33.5 | 36.49 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 33.25 | 36.21 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 30.18 | 36.09 |
| KRH29144 | Soybean | nucleus | 24.04 | 35.88 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 32.74 | 35.85 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 29.16 | 34.76 |
| TraesCSU01G126200.1 | Wheat | cytosol | 30.69 | 34.58 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 30.18 | 34.3 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 30.43 | 33.81 |
| EER95660 | Sorghum | nucleus | 29.67 | 33.14 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 28.13 | 33.03 |
| Zm00001d027325_P002 | Maize | cytosol | 25.32 | 33.0 |
| Zm00001d036338_P001 | Maize | nucleus | 25.83 | 32.37 |
| Os06t0729900-00 | Rice | nucleus | 26.6 | 31.71 |
| Zm00001d048521_P001 | Maize | nucleus | 29.92 | 31.71 |
| EER89011 | Sorghum | nucleus | 27.37 | 31.47 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 20.97 | 30.94 |
| HORVU1Hr1G042690.2 | Barley | plastid | 32.99 | 29.45 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 28.64 | 29.24 |
Protein Annotations
| EnsemblPlants:CDY02209 | EnsemblPlantsGene:GSBRNA2T00113624001 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFAM:PF01476 | PFscan:PS51782 | ProteinID:CDY02209 |
| ProteinID:CDY02209.1 | SEG:seg | SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI0004EE4507 | MapMan:35.2 |
Description
BnaA03g39580D
Coordinates
chrLK031932:+:728837..730688
Molecular Weight (calculated)
42197.6 Da
IEP (calculated)
10.187
GRAVY (calculated)
-0.574
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTDRGRRVS ICIGTLEYGN RKFRGGGGNG CYGGFVDRSS ERCRDWSPSK SSTSRILRIS SPTTSPPSSA TSPVSLNCSF SNGAGYIEHR VSKFDTLAGI
101: AIKYGVEVAD ITKLNGLVTD LQMFALKSLR IPLPGRHPPS PCLSNASLNH GEDCSEPAAS SSSASNGNLQ DVFDPFQSLK LKPSETKISP AMDSLQGYYG
201: LKPTNERASY PQEDNGHQYL TPTSTPLNQH RKSRSLVDAV IAEVNQSSYH QSKEVDSDKP TRRRQKSEAD FSSRTPELLL KKESRSSCGG FSAIAGKGLA
301: LRPKAVSKTN LSAPVPINAP VGDSFSSVRK SFSASVLQEP VSNNKGSSSS LWQSSKWTLK ADLLQQAAMA RSIFDGLPKP LTGRRNKKAM D
101: AIKYGVEVAD ITKLNGLVTD LQMFALKSLR IPLPGRHPPS PCLSNASLNH GEDCSEPAAS SSSASNGNLQ DVFDPFQSLK LKPSETKISP AMDSLQGYYG
201: LKPTNERASY PQEDNGHQYL TPTSTPLNQH RKSRSLVDAV IAEVNQSSYH QSKEVDSDKP TRRRQKSEAD FSSRTPELLL KKESRSSCGG FSAIAGKGLA
301: LRPKAVSKTN LSAPVPINAP VGDSFSSVRK SFSASVLQEP VSNNKGSSSS LWQSSKWTLK ADLLQQAAMA RSIFDGLPKP LTGRRNKKAM D
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.