Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89011 | Sorghum | nucleus | 73.4 | 67.35 |
| Os06t0729900-00 | Rice | nucleus | 53.53 | 50.91 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 52.56 | 50.15 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 52.56 | 50.0 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 50.0 | 46.85 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 52.88 | 43.08 |
| GSMUA_Achr11P... | Banana | nucleus | 34.29 | 30.14 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 33.65 | 28.61 |
| Zm00001d032656_P001 | Maize | nucleus | 32.69 | 28.41 |
| PGSC0003DMT400027432 | Potato | cytosol | 30.13 | 28.31 |
| Zm00001d013983_P001 | Maize | cytosol | 32.37 | 28.13 |
| GSMUA_Achr11P... | Banana | nucleus | 32.05 | 27.62 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 28.85 | 27.52 |
| Solyc02g014090.2.1 | Tomato | nucleus | 30.45 | 26.46 |
| CDY02209 | Canola | cytosol | 32.37 | 25.83 |
| Zm00001d027325_P002 | Maize | cytosol | 24.68 | 25.67 |
| Bra013019.1-P | Field mustard | cytosol | 32.05 | 25.64 |
| PGSC0003DMT400050883 | Potato | nucleus | 27.88 | 25.51 |
| CDY20605 | Canola | nucleus | 23.72 | 25.43 |
| CDX78327 | Canola | nucleus | 30.45 | 25.33 |
| CDY40759 | Canola | nucleus | 30.13 | 25.0 |
| Bra028667.1-P | Field mustard | nucleus | 30.13 | 25.0 |
| AT5G23130.1 | Thale cress | nucleus | 31.73 | 24.94 |
| Solyc11g039960.1.1 | Tomato | nucleus | 27.24 | 24.85 |
| AT5G08200.1 | Thale cress | nucleus | 32.37 | 24.69 |
| CDX81087 | Canola | nucleus | 29.81 | 24.67 |
| Bra005977.1-P | Field mustard | nucleus | 31.73 | 24.63 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 31.09 | 24.37 |
| CDY61916 | Canola | cytosol | 31.41 | 24.32 |
| KRH09395 | Soybean | nucleus | 27.56 | 24.29 |
| CDY21521 | Canola | nucleus | 32.37 | 24.16 |
| KRH38892 | Soybean | cytosol | 26.92 | 24.07 |
| Bra008537.1-P | Field mustard | nucleus | 18.59 | 23.67 |
| Zm00001d048521_P001 | Maize | nucleus | 27.88 | 23.58 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 17.31 | 23.48 |
| Bra009329.1-P | Field mustard | nucleus | 31.09 | 23.21 |
| CDX69966 | Canola | nucleus | 31.09 | 23.1 |
| KRH29144 | Soybean | nucleus | 18.91 | 22.52 |
| CDY44762 | Canola | nucleus | 30.77 | 22.38 |
| KRH40869 | Soybean | nucleus | 25.0 | 21.85 |
| KRG89129 | Soybean | nucleus | 24.36 | 21.47 |
Protein Annotations
| EMBL:BT054103 | EnsemblPlants:Zm00001d036338_P001 | EnsemblPlants:Zm00001d036338_T001 | EnsemblPlantsGene:Zm00001d036338 | EntrezGene:100279352 | Gene3D:3.10.350.10 |
| InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom | InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF12 |
| PFAM:PF01476 | PFscan:PS51782 | ProteinID:AQK80670.1 | SEG:seg | SMART:SM00257 | SUPFAM:SSF54106 |
| UniParc:UPI00019170BB | UniProt:B7ZXR1 | MapMan:35.2 | : | : | : |
Description
peptidoglycan-binding LysM domain-containing protein
Coordinates
chr6:-:84763765..84765776
Molecular Weight (calculated)
33586.5 Da
IEP (calculated)
10.024
GRAVY (calculated)
-0.578
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MGISHPLSDE YDALRGAVLS PDTTPPSSPL AHRHLLEHEV TRMDTLAGIA IKYGVEISDI KRANSLVTDS QMFAHKSLLI PLPGMPMPSL NACGQRTIRT
101: CAPNHRQKRD APKSRQQGAS SAMNTLQRYY GLTPPQKGGN TMDSSTELSV YHKGGGFQSN LSETLLNPSA APGTDSSWNF EALGFSATEG DGGAPKPEQD
201: GSMRRRQKVE AESNAQGDFL VKAIKSLLIS SVRLDTYAGS PGSSQKSGFR SVTVRKSPSA PSFADADNGV SMWSSSKWTF SHDSFTRPLL DGLPKPASAR
301: RTNQNRVGLK LN
101: CAPNHRQKRD APKSRQQGAS SAMNTLQRYY GLTPPQKGGN TMDSSTELSV YHKGGGFQSN LSETLLNPSA APGTDSSWNF EALGFSATEG DGGAPKPEQD
201: GSMRRRQKVE AESNAQGDFL VKAIKSLLIS SVRLDTYAGS PGSSQKSGFR SVTVRKSPSA PSFADADNGV SMWSSSKWTF SHDSFTRPLL DGLPKPASAR
301: RTNQNRVGLK LN
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Arabidopsis Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.