CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028667.1-P	Field mustard	nucleus	79.72	90.96
CDY40759	Canola	nucleus	79.72	90.96
CDY21521	Canola	nucleus	70.86	72.73
CDX69966	Canola	nucleus	70.86	72.38
AT5G08200.1	Thale cress	nucleus	68.3	71.64
CDX81087	Canola	nucleus	62.24	70.82
CDX78327	Canola	nucleus	61.31	70.13
CDY20605	Canola	nucleus	46.85	69.07
CDY61916	Canola	cytosol	51.05	54.34
CDY02209	Canola	cytosol	48.25	52.94
PGSC0003DMT400027432	Potato	cytosol	36.83	47.59
Solyc02g014090.2.1	Tomato	nucleus	37.3	44.57
PGSC0003DMT400050883	Potato	nucleus	35.2	44.28
Solyc11g039960.1.1	Tomato	nucleus	35.2	44.15
GSMUA_Achr4P29860_001	Banana	nucleus	31.47	41.28
VIT_01s0011g02130.t01	Wine grape	nucleus	38.23	41.21
GSMUA_Achr11P...	Banana	nucleus	31.93	38.59
GSMUA_Achr11P...	Banana	nucleus	31.93	37.85
GSMUA_Achr2P10710_001	Banana	nucleus	31.47	36.78
KRH29144	Soybean	nucleus	21.68	35.5
Os10t0485500-01	Rice	cytosol	30.3	35.33
TraesCS1A01G160800.1	Wheat	nucleus	29.37	35.29
TraesCS1B01G177500.1	Wheat	nucleus	29.37	35.1
EER94055	Sorghum	nucleus	29.37	35.0
Zm00001d032656_P001	Maize	nucleus	29.14	34.82
TraesCS4B01G387000.1	Wheat	cytosol	28.44	34.66
Zm00001d013983_P001	Maize	cytosol	28.9	34.54
TraesCSU01G126200.1	Wheat	cytosol	27.51	34.01
TraesCS5A01G551300.1	Wheat	cytosol	26.81	33.43
TraesCS7D01G549400.1	Wheat	nucleus	24.94	32.62
TraesCS7A01G560400.1	Wheat	nucleus	24.71	32.42
EER95660	Sorghum	nucleus	26.34	32.29
HORVU4Hr1G089910.8	Barley	cytosol	19.81	32.08
Zm00001d027325_P002	Maize	cytosol	22.14	31.67
TraesCS7B01G486800.1	Wheat	nucleus	24.24	31.23
Zm00001d036338_P001	Maize	nucleus	22.38	30.77
Zm00001d048521_P001	Maize	nucleus	26.11	30.35
Os06t0729900-00	Rice	nucleus	22.61	29.57
EER89011	Sorghum	nucleus	23.31	29.41
HORVU1Hr1G042690.2	Barley	plastid	29.6	29.0
HORVU7Hr1G120120.1	Barley	cytosol	24.94	27.94

Protein Annotations

EnsemblPlants:CDY44762	EnsemblPlantsGene:GSBRNA2T00080760001	Gene3D:3.10.350.10	InterPro:IPR018392	InterPro:IPR036779	InterPro:LysM_dom
InterPro:LysM_dom_sf	PANTHER:PTHR20932	PANTHER:PTHR20932:SF29	PFscan:PS51782	ProteinID:CDY44762	ProteinID:CDY44762.1
SEG:seg	UniParc:UPI0004EF34BE	UniProt:A0A078I3W3	MapMan:35.2	:	:

Description

BnaC02g01250DBnaC02g01250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3W3]

Coordinates

chrLK032601:+:18979..21341

Molecular Weight (calculated)

47036.9 Da

IEP (calculated)

9.832

GRAVY (calculated)

-0.687

Length

429 amino acids

Sequence
(BLAST)

001: MFMDCRERRL SNRNGTSPEY TNGKFRDDKN SYDGGFFLDR SREKSPSSSN ILRIPSPTSS SSSSPPRSSS SSPYHGSSSP DRGFIEHRVS KFDTLAGIAI
101: KYGVEVGDVK KMNGLVTDLQ MFALKSLRIT LPGRHPPSPC LSNGSLHHGE GCSCHELGSQ NDTNSDAFDS FQSLRLKSSE KKGYYGLKPP IRTVSVGGSL
201: EMGAYKTESN GDSQYLRPFT STNTPLNHHR KSRSLVDALL EEFNQSSQEP SSNKFMRRRQ KSEADFTSRT PELMLKEENS SSNGGFLSSV GGKGLALRSK
301: ASSRTSLSSA ESETCSFNPV PMNLIDTPVS DSFASVRKSS SAWSLQDPDG NSNNGSSSLS LWPTSKWSLK PDLLTTPAVI TSSIFDGLPK PLTGRRNKTA
401: MDYTKLSPFF LLKLYKSKVE EAVFRLSAE

Best Arabidopsis Sequence Match ( AT5G08200.1 )
(BLAST)

001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD

Arabidopsis Description

At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.