Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036338_P001 | Maize | nucleus | 67.35 | 73.4 |
| Os06t0729900-00 | Rice | nucleus | 60.59 | 62.8 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 59.12 | 61.28 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 57.65 | 59.94 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 56.76 | 57.96 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 59.41 | 52.74 |
| GSMUA_Achr11P... | Banana | nucleus | 36.47 | 34.93 |
| EER94055 | Sorghum | nucleus | 34.71 | 32.78 |
| PGSC0003DMT400027432 | Potato | cytosol | 31.47 | 32.23 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 34.71 | 32.15 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 30.88 | 32.11 |
| GSMUA_Achr11P... | Banana | nucleus | 34.12 | 32.04 |
| PGSC0003DMT400050883 | Potato | nucleus | 31.76 | 31.67 |
| Solyc11g039960.1.1 | Tomato | nucleus | 31.18 | 30.99 |
| Solyc02g014090.2.1 | Tomato | nucleus | 32.06 | 30.36 |
| EER95660 | Sorghum | nucleus | 30.0 | 29.14 |
| KRH09395 | Soybean | nucleus | 30.29 | 29.1 |
| KRH38892 | Soybean | cytosol | 29.71 | 28.94 |
| CDY20605 | Canola | nucleus | 23.82 | 27.84 |
| CDY02209 | Canola | cytosol | 31.47 | 27.37 |
| Bra013019.1-P | Field mustard | cytosol | 31.18 | 27.18 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 18.24 | 26.96 |
| Bra008537.1-P | Field mustard | nucleus | 19.41 | 26.94 |
| CDX78327 | Canola | nucleus | 29.71 | 26.93 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 31.47 | 26.88 |
| Bra028667.1-P | Field mustard | nucleus | 29.41 | 26.6 |
| CDY40759 | Canola | nucleus | 29.41 | 26.6 |
| Bra005977.1-P | Field mustard | nucleus | 31.18 | 26.37 |
| CDY21521 | Canola | nucleus | 32.35 | 26.32 |
| CDX81087 | Canola | nucleus | 28.82 | 25.99 |
| KRH29144 | Soybean | nucleus | 20.0 | 25.95 |
| AT5G23130.1 | Thale cress | nucleus | 30.29 | 25.94 |
| KRH40869 | Soybean | nucleus | 27.06 | 25.77 |
| AT5G08200.1 | Thale cress | nucleus | 30.88 | 25.67 |
| CDY61916 | Canola | cytosol | 30.29 | 25.56 |
| Bra009329.1-P | Field mustard | nucleus | 31.18 | 25.36 |
| CDX69966 | Canola | nucleus | 31.18 | 25.24 |
| KRG89129 | Soybean | nucleus | 26.18 | 25.14 |
| CDY44762 | Canola | nucleus | 29.41 | 23.31 |
Protein Annotations
| Gene3D:3.10.350.10 | MapMan:35.2 | EntrezGene:8066391 | UniProt:C5Z2M0 | EnsemblPlants:EER89011 | ProteinID:EER89011 |
| ProteinID:EER89011.1 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom | InterPro:LysM_dom_sf | PFAM:PF01476 |
| PFscan:PS51782 | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF12 | SMART:SM00257 | EnsemblPlantsGene:SORBI_3010G277800 | SUPFAM:SSF54106 |
| UniParc:UPI0001A898EB | RefSeq:XP_002437644.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:61046769..61049577
Molecular Weight (calculated)
36684.2 Da
IEP (calculated)
9.724
GRAVY (calculated)
-0.594
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MGISHPLSDE YDALRGAVLS PQTTPPSSPL AHHHHLLEHE VTRMDTLAGI AIKYGVEISD IKRANSLVTD SQMFAHKTLL IPLPGMPMPS SVKLNGSDQK
101: TKRAWAPNHR QNRDALDSLD SSKSGQQGAS PAMSTLQRYY GLTSEKGNTM NLSTEMSVYH KGGLQSNLSE TLLNPSAAPG TNDTDRSCDF EAPASTGFSA
201: TNIANGTKGG MAAKPKQDGS VRRRQKVEAE PNTTNTHDDF LADPIKAIKS LLPRPVSSIR LNMDTGSPDS SQKTSMSFLN GLKSVTVRKS PSAPSFVDAE
301: NGVSMWSSSK WTFNHDSFTR PLLDGLPKPV SARRTKTALD
101: TKRAWAPNHR QNRDALDSLD SSKSGQQGAS PAMSTLQRYY GLTSEKGNTM NLSTEMSVYH KGGLQSNLSE TLLNPSAAPG TNDTDRSCDF EAPASTGFSA
201: TNIANGTKGG MAAKPKQDGS VRRRQKVEAE PNTTNTHDDF LADPIKAIKS LLPRPVSSIR LNMDTGSPDS SQKTSMSFLN GLKSVTVRKS PSAPSFVDAE
301: NGVSMWSSSK WTFNHDSFTR PLLDGLPKPV SARRTKTALD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.