CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40869	Soybean	nucleus	86.16	85.43
PGSC0003DMT400027432	Potato	cytosol	50.28	53.61
Solyc02g014090.2.1	Tomato	nucleus	52.26	51.53
VIT_01s0011g02130.t01	Wine grape	nucleus	53.67	47.74
PGSC0003DMT400050883	Potato	nucleus	45.48	47.21
Solyc11g039960.1.1	Tomato	nucleus	44.92	46.49
GSMUA_Achr4P29860_001	Banana	nucleus	41.81	45.26
GSMUA_Achr11P...	Banana	nucleus	42.66	42.54
GSMUA_Achr2P10710_001	Banana	nucleus	43.22	41.69
GSMUA_Achr11P...	Banana	nucleus	41.53	40.61
KRH29144	Soybean	nucleus	29.94	40.46
KRH38892	Soybean	cytosol	39.83	40.4
KRH09395	Soybean	nucleus	39.83	39.83
TraesCS1A01G160800.1	Wheat	nucleus	36.72	36.41
EER94055	Sorghum	nucleus	37.01	36.39
TraesCS1B01G177500.1	Wheat	nucleus	36.72	36.21
Os10t0485500-01	Rice	cytosol	37.57	36.14
Zm00001d013983_P001	Maize	cytosol	36.44	35.93
Zm00001d032656_P001	Maize	nucleus	35.59	35.1
TraesCSU01G126200.1	Wheat	cytosol	33.62	34.29
TraesCS5A01G551300.1	Wheat	cytosol	33.05	34.01
TraesCS4B01G387000.1	Wheat	cytosol	33.62	33.81
Zm00001d027325_P002	Maize	cytosol	28.25	33.33
HORVU4Hr1G089910.8	Barley	cytosol	24.58	32.83
EER95660	Sorghum	nucleus	31.64	32.0
HORVU1Hr1G042690.2	Barley	plastid	38.42	31.05
TraesCS7D01G549400.1	Wheat	nucleus	28.53	30.79
TraesCS7A01G560400.1	Wheat	nucleus	28.25	30.58
Zm00001d048521_P001	Maize	nucleus	31.64	30.35
TraesCS7B01G486800.1	Wheat	nucleus	26.55	28.23
Os06t0729900-00	Rice	nucleus	25.99	28.05
EER89011	Sorghum	nucleus	25.14	26.18
HORVU7Hr1G120120.1	Barley	cytosol	27.4	25.33
Zm00001d036338_P001	Maize	nucleus	21.47	24.36

Protein Annotations

EntrezGene:100786352	Gene3D:3.10.350.10	MapMan:35.2	EMBL:ACUP02012187	EnsemblPlantsGene:GLYMA_20G003100	UniProt:I1NCX7
InterPro:IPR018392	InterPro:IPR036779	EnsemblPlants:KRG89129	ProteinID:KRG89129	ProteinID:KRG89129.1	InterPro:LysM_dom
InterPro:LysM_dom_sf	PFAM:PF01476	PFscan:PS51782	PANTHER:PTHR20932	PANTHER:PTHR20932:SF29	SMART:SM00257
SUPFAM:SSF54106	UniParc:UPI000233DDC9	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:288005..292453

Molecular Weight (calculated)

38634.3 Da

IEP (calculated)

9.233

GRAVY (calculated)

-0.689

Length

354 amino acids

Sequence
(BLAST)

001: MERENWREHI NSNGNYYDDD GVERSPAKPS SLSSSPPRLA YIDHRVSKFD TLAGVAIKYG VEVADIRKMN NLVTDHQMFA LKTLHIPLPG RHPPSPCLSN
101: GSSTPGHGNY DHSPPSQAHH DLLDSFESLR IKSSERKVSP AMNSLQGYYG LKGTPSPSED GPFPRNLPMS DRRLSRHRKS RSLVNVILEE IMQKSDDAPA
201: AETREINSNK WNDKLGQGHQ KSVADFTRIP ELLLREDNSS SGVLSSRIGK GLALRQKAAN RTAATIDSEP IGLNPAVLGM GDTSLNDGSY GVRKSSSTSC
301: LQDQDTSGSS SIWPTSMWSL KPDLQALSSA AIGKPIFDGL PKPITGRKNK AALD

Best Arabidopsis Sequence Match ( AT5G08200.1 )
(BLAST)

001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD

Arabidopsis Description

At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.