Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 62.82 | 61.6 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 45.92 | 49.85 |
| PGSC0003DMT400027432 | Potato | cytosol | 44.23 | 47.29 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 47.32 | 45.78 |
| Solyc02g014090.2.1 | Tomato | nucleus | 46.2 | 45.68 |
| Os10t0485500-01 | Rice | cytosol | 45.35 | 43.75 |
| KRG89129 | Soybean | nucleus | 42.54 | 42.66 |
| Zm00001d032656_P001 | Maize | nucleus | 42.25 | 41.78 |
| EER94055 | Sorghum | nucleus | 41.97 | 41.39 |
| Solyc11g039960.1.1 | Tomato | nucleus | 39.72 | 41.23 |
| Zm00001d013983_P001 | Maize | cytosol | 41.69 | 41.23 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 41.41 | 41.18 |
| PGSC0003DMT400050883 | Potato | nucleus | 39.44 | 41.06 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 39.72 | 40.99 |
| TraesCSU01G126200.1 | Wheat | cytosol | 40.0 | 40.92 |
| CDY20605 | Canola | nucleus | 33.52 | 40.89 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 41.13 | 40.67 |
| KRH40869 | Soybean | nucleus | 40.85 | 40.62 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 25.92 | 40.0 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 44.79 | 39.95 |
| Os06t0729900-00 | Rice | nucleus | 36.9 | 39.94 |
| EER95660 | Sorghum | nucleus | 38.87 | 39.43 |
| CDX78327 | Canola | nucleus | 41.41 | 39.2 |
| KRH38892 | Soybean | cytosol | 38.03 | 38.68 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 38.31 | 38.64 |
| CDX81087 | Canola | nucleus | 40.56 | 38.2 |
| KRH09395 | Soybean | nucleus | 37.75 | 37.85 |
| Zm00001d027325_P002 | Maize | cytosol | 31.83 | 37.67 |
| Bra005977.1-P | Field mustard | nucleus | 42.54 | 37.56 |
| Bra008537.1-P | Field mustard | nucleus | 25.92 | 37.55 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 34.08 | 37.0 |
| AT5G08200.1 | Thale cress | nucleus | 42.54 | 36.92 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 34.08 | 36.89 |
| Bra013019.1-P | Field mustard | cytosol | 40.28 | 36.67 |
| Bra009329.1-P | Field mustard | nucleus | 43.1 | 36.6 |
| AT5G23130.1 | Thale cress | nucleus | 40.85 | 36.52 |
| EER89011 | Sorghum | nucleus | 34.93 | 36.47 |
| CDX69966 | Canola | nucleus | 43.1 | 36.43 |
| CDY21521 | Canola | nucleus | 42.82 | 36.36 |
| CDY02209 | Canola | cytosol | 39.72 | 36.06 |
| CDY61916 | Canola | cytosol | 40.85 | 35.98 |
| CDY40759 | Canola | nucleus | 37.75 | 35.64 |
| Bra028667.1-P | Field mustard | nucleus | 37.75 | 35.64 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 26.48 | 35.47 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 32.96 | 35.14 |
| KRH29144 | Soybean | nucleus | 25.63 | 34.73 |
| Zm00001d036338_P001 | Maize | nucleus | 30.14 | 34.29 |
| HORVU1Hr1G042690.2 | Barley | plastid | 41.97 | 34.02 |
| Zm00001d048521_P001 | Maize | nucleus | 34.37 | 33.06 |
| CDY44762 | Canola | nucleus | 38.59 | 31.93 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 34.37 | 31.85 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P16950_001 | EnsemblPlants:GSMUA_Achr11T16950_001 | EnsemblPlantsGene:GSMUA_Achr11G16950_001 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 |
| InterPro:LysM_dom | InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFscan:PS51782 | SEG:seg |
| SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI000294E521 | UniProt:M0RSX5 | MapMan:35.2 | : |
Description
lysM domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G16950_001]
Coordinates
chr11:+:18634811..18639627
Molecular Weight (calculated)
38624.9 Da
IEP (calculated)
9.519
GRAVY (calculated)
-0.538
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MQADRVRRTS HLFSDDLLDT AATIPISSSA TSLASSSSSD SLPRVNYIEH RVSKMDTLPG VAIKYGVEVA DIKRLNGLTT DIQMFARKTL QIPLPGRHPP
101: SPCLSNGSFA NGSYSRQHTS PHRPSNNVLD LFHSLELKTP PSKVSPAMSS LQAYYGLTPP KKGADTAETE MAVYRKGCCL ADELKEPPFS DPLPGRHRKS
201: ICLANGFPLG NGEITKGKNI LETADNNESE KPIRRRQKND ASPSLGATEL LLEDNSSDLI SVRKGKGLAM RPKLGSRTDM DMGHPKASPH GDSVMTDGFV
301: SVRKSSSTSS LQDSEDHSSI WLTSKWTLNP ELLARPLFDG LPKPIIVRKN KAALD
101: SPCLSNGSFA NGSYSRQHTS PHRPSNNVLD LFHSLELKTP PSKVSPAMSS LQAYYGLTPP KKGADTAETE MAVYRKGCCL ADELKEPPFS DPLPGRHRKS
201: ICLANGFPLG NGEITKGKNI LETADNNESE KPIRRRQKND ASPSLGATEL LLEDNSSDLI SVRKGKGLAM RPKLGSRTDM DMGHPKASPH GDSVMTDGFV
301: SVRKSSSTSS LQDSEDHSSI WLTSKWTLNP ELLARPLFDG LPKPIIVRKN KAALD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.